RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 EIF2AQ9BY44 585 aaKnown RBP16.98■□□□□ 0.31
SS18-216ENST00000580751 FGFBP2Q9BYJ0 223 aa16.98■□□□□ 0.31
SS18-216ENST00000580751 TMEM206Q9H813 350 aa16.98■□□□□ 0.31
SS18-216ENST00000580751 ANKFY1Q9P2R3 1169 aa16.98■□□□□ 0.31
SS18-216ENST00000580751 USP20Q9Y2K6 914 aa16.98■□□□□ 0.31
SS18-216ENST00000580751 TLL1O43897 1013 aa16.97■□□□□ 0.31
SS18-216ENST00000580751 KIF20AO95235 890 aa16.97■□□□□ 0.31
SS18-216ENST00000580751 MCF2P10911 925 aa16.97■□□□□ 0.31
SS18-216ENST00000580751 PROZP22891 400 aa16.97■□□□□ 0.31
SS18-216ENST00000580751 ERCC5P28715 1186 aaPredicted RBP16.97■□□□□ 0.31
SS18-216ENST00000580751 SMAD3P84022 425 aaKnown RBP16.97■□□□□ 0.31
SS18-216ENST00000580751 EEF1DP3Q658K8 133 aa16.97■□□□□ 0.31
SS18-216ENST00000580751 FAM109BQ6ICB4 259 aaPredicted RBP16.97■□□□□ 0.31
SS18-216ENST00000580751 FAM117BQ6P1L5 589 aa16.97■□□□□ 0.31
SS18-216ENST00000580751 EPM2AIP1Q7L775 607 aaPredicted RBP16.97■□□□□ 0.31
SS18-216ENST00000580751 TMCO2Q7Z6W1 182 aaPredicted RBP16.97■□□□□ 0.31
SS18-216ENST00000580751 MRPL10Q7Z7H8 261 aaKnown RBP16.97■□□□□ 0.31
SS18-216ENST00000580751 SYCP3Q8IZU3 236 aa16.97■□□□□ 0.31
SS18-216ENST00000580751 FAM200AQ8TCP9 573 aa16.97■□□□□ 0.31
SS18-216ENST00000580751 YME1L1Q96TA2 773 aa16.97■□□□□ 0.31
SS18-216ENST00000580751 RAD9AQ99638 391 aa16.97■□□□□ 0.31
SS18-216ENST00000580751 PTPRHQ9HD43 1115 aa16.97■□□□□ 0.31
SS18-216ENST00000580751 SLC39A2Q9NP94 309 aa16.97■□□□□ 0.31
SS18-216ENST00000580751 IPPQ9Y573 584 aa16.97■□□□□ 0.31
SS18-216ENST00000580751 INSL6Q9Y581 213 aa16.97■□□□□ 0.31
SS18-216ENST00000580751 PCDHA11Q9Y5I1 949 aa16.97■□□□□ 0.31
SS18-216ENST00000580751 FSD2A1L4K1 749 aa16.96■□□□□ 0.31
SS18-216ENST00000580751 CLDN3O15551 220 aa16.96■□□□□ 0.31
SS18-216ENST00000580751 DGKIO75912 1065 aa16.96■□□□□ 0.31
SS18-216ENST00000580751 PRPF6O94906 941 aaKnown RBP16.96■□□□□ 0.31
SS18-216ENST00000580751 ITGA4P13612 1032 aa16.96■□□□□ 0.31
SS18-216ENST00000580751 ATF7P17544 494 aaPredicted RBP16.96■□□□□ 0.31
SS18-216ENST00000580751 HTRA4P83105 476 aaPredicted RBP16.96■□□□□ 0.31
SS18-216ENST00000580751 STK4Q13043 487 aa16.96■□□□□ 0.31
SS18-216ENST00000580751 STIM1Q13586 685 aa16.96■□□□□ 0.31
SS18-216ENST00000580751 NOLC1Q14978 699 aaKnown RBP eCLIP16.96■□□□□ 0.31
SS18-216ENST00000580751 BMT2Q1RMZ1 405 aa16.96■□□□□ 0.31
SS18-216ENST00000580751 FOXR2Q6PJQ5 311 aa16.96■□□□□ 0.31
SS18-216ENST00000580751 ABI1Q8IZP0 508 aa16.96■□□□□ 0.31
SS18-216ENST00000580751 SMG8Q8ND04 991 aaKnown RBP16.96■□□□□ 0.31
SS18-216ENST00000580751 GLIS3Q8NEA6 775 aa16.96■□□□□ 0.31
SS18-216ENST00000580751 ZNF507Q8TCN5 953 aa16.96■□□□□ 0.31
SS18-216ENST00000580751 ERCC4Q92889 916 aaPredicted RBP16.96■□□□□ 0.31
SS18-216ENST00000580751 CDT1Q9H211 546 aa16.96■□□□□ 0.31
SS18-216ENST00000580751 NXF3Q9H4D5 531 aaKnown RBP16.96■□□□□ 0.31
SS18-216ENST00000580751 UBN1Q9NPG3 1134 aa16.96■□□□□ 0.31
SS18-216ENST00000580751 MSRAQ9UJ68 235 aa16.96■□□□□ 0.31
SS18-216ENST00000580751 COL4A6Q14031 1691 aa16.96■□□□□ 0.31
SS18-216ENST00000580751 ZMYM2Q9UBW7 1377 aa16.95■□□□□ 0.3
SS18-216ENST00000580751 GOLGA6L3A6NEY3 463 aa16.95■□□□□ 0.3
SS18-216ENST00000580751 GRXCR1A8MXD5 290 aa16.95■□□□□ 0.3
SS18-216ENST00000580751 ABLIM1O14639 778 aa16.95■□□□□ 0.3
SS18-216ENST00000580751 MATR3P43243 847 aaKnown RBP eCLIP16.95■□□□□ 0.3
SS18-216ENST00000580751 ZNF165P49910 485 aa16.95■□□□□ 0.3
SS18-216ENST00000580751 MCL1Q07820 350 aa16.95■□□□□ 0.3
SS18-216ENST00000580751 KCNA1Q09470 495 aa16.95■□□□□ 0.3
SS18-216ENST00000580751 ANO6Q4KMQ2 910 aa16.95■□□□□ 0.3
SS18-216ENST00000580751 SLFN12LQ6IEE8 588 aa16.95■□□□□ 0.3
SS18-216ENST00000580751 GLB1LQ6UWU2 654 aa16.95■□□□□ 0.3
SS18-216ENST00000580751 ZBTB33Q86T24 672 aa16.95■□□□□ 0.3
SS18-216ENST00000580751 KIAA0895Q8NCT3 520 aa16.95■□□□□ 0.3
SS18-216ENST00000580751 SCFD1Q8WVM8 642 aa16.95■□□□□ 0.3
SS18-216ENST00000580751 RC3H2Q9HBD1 1191 aaKnown RBP16.95■□□□□ 0.3
SS18-216ENST00000580751 SMTNL1A8MU46 457 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 BIN1O00499 593 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 IKBKBO14920 756 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 FGFR1P11362 822 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 BMP6P22004 513 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 RABGGTBP53611 331 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 KYAT1Q16773 422 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 UVSSAQ2YD98 709 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 DPCR1Q3MIW9 517 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 LPPQ93052 612 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 ZNF689Q96CS4 500 aaPredicted RBP16.94■□□□□ 0.3
SS18-216ENST00000580751 DHTKD1Q96HY7 919 aaPredicted RBP16.94■□□□□ 0.3
SS18-216ENST00000580751 CCDC94Q9BW85 323 aaPredicted RBP16.94■□□□□ 0.3
SS18-216ENST00000580751 PBX4Q9BYU1 374 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 TMEM117Q9H0C3 514 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 GBP3Q9H0R5 595 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 RSAD1Q9HA92 442 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 HES2Q9Y543 173 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 STYXL1Q9Y6J8 313 aa16.94■□□□□ 0.3
SS18-216ENST00000580751 A0A0B4J269 797 aa16.93■□□□□ 0.3
SS18-216ENST00000580751 HARSP12081 509 aaKnown RBP16.93■□□□□ 0.3
SS18-216ENST00000580751 GRM5P41594 1212 aa16.93■□□□□ 0.3
SS18-216ENST00000580751 SNRPFP62306 86 aaKnown RBP16.93■□□□□ 0.3
SS18-216ENST00000580751 KNOP1Q1ED39 458 aaKnown RBP16.93■□□□□ 0.3
SS18-216ENST00000580751 CLLU1OSQ5K130 101 aa16.93■□□□□ 0.3
SS18-216ENST00000580751 SLC39A4Q6P5W5 647 aa16.93■□□□□ 0.3
SS18-216ENST00000580751 AGMOQ6ZNB7 445 aa16.93■□□□□ 0.3
SS18-216ENST00000580751 HS2ST1Q7LGA3 356 aa16.93■□□□□ 0.3
SS18-216ENST00000580751 GAS2L3Q86XJ1 694 aa16.93■□□□□ 0.3
SS18-216ENST00000580751 CMTR2Q8IYT2 770 aaKnown RBP16.93■□□□□ 0.3
SS18-216ENST00000580751 GUF1Q8N442 669 aaKnown RBP16.93■□□□□ 0.3
SS18-216ENST00000580751 GOLGA5Q8TBA6 731 aa16.93■□□□□ 0.3
SS18-216ENST00000580751 SP7Q8TDD2 431 aaPredicted RBP16.93■□□□□ 0.3
SS18-216ENST00000580751 ZBTB45Q96K62 511 aaPredicted RBP16.93■□□□□ 0.3
SS18-216ENST00000580751 MSTO1Q9BUK6 570 aa16.93■□□□□ 0.3
SS18-216ENST00000580751 APOL6Q9BWW8 343 aa16.93■□□□□ 0.3
SS18-216ENST00000580751 MRPL9Q9BYD2 267 aaKnown RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms