RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 FUBP3Q96I24 572 aaKnown RBP eCLIP8.51□□□□□ -1.05
SS18-214ENST00000580003 UHRF1Q96T88 793 aaPredicted RBP8.51□□□□□ -1.05
SS18-214ENST00000580003 SMAD5Q99717 465 aaKnown RBP8.51□□□□□ -1.05
SS18-214ENST00000580003 BCO1Q9HAY6 547 aa8.51□□□□□ -1.05
SS18-214ENST00000580003 MAN2A2P49641 1150 aa8.5□□□□□ -1.05
SS18-214ENST00000580003 IGBP1P78318 339 aa8.5□□□□□ -1.05
SS18-214ENST00000580003 PUM1Q14671 1186 aaKnown RBP eCLIP8.5□□□□□ -1.05
SS18-214ENST00000580003 PNMA8AQ86V59 439 aaPredicted RBP8.5□□□□□ -1.05
SS18-214ENST00000580003 C1orf210Q8IVY1 113 aa8.5□□□□□ -1.05
SS18-214ENST00000580003 LILRA3Q8N6C8 439 aaPredicted RBP8.5□□□□□ -1.05
SS18-214ENST00000580003 PPM1NQ8N819 430 aa8.5□□□□□ -1.05
SS18-214ENST00000580003 OR7D4Q8NG98 312 aa8.5□□□□□ -1.05
SS18-214ENST00000580003 EXTL1Q92935 676 aa8.5□□□□□ -1.05
SS18-214ENST00000580003 PDCD2LQ9BRP1 358 aa8.5□□□□□ -1.05
SS18-214ENST00000580003 GPR87Q9BY21 358 aa8.5□□□□□ -1.05
SS18-214ENST00000580003 TRPS1Q9UHF7 1281 aa8.5□□□□□ -1.05
SS18-214ENST00000580003 KRTAP23-1A1A580 65 aa8.49□□□□□ -1.05
SS18-214ENST00000580003 GOLGA6L6A8MZA4 724 aa8.49□□□□□ -1.05
SS18-214ENST00000580003 CCND1P24385 295 aa8.49□□□□□ -1.05
SS18-214ENST00000580003 PTPN7P35236 360 aa8.49□□□□□ -1.05
SS18-214ENST00000580003 RRP1BQ14684 758 aaKnown RBP8.49□□□□□ -1.05
SS18-214ENST00000580003 PTPN21Q16825 1174 aa8.49□□□□□ -1.05
SS18-214ENST00000580003 RNF207Q6ZRF8 634 aa8.49□□□□□ -1.05
SS18-214ENST00000580003 Q6ZRM9 215 aa8.49□□□□□ -1.05
SS18-214ENST00000580003 SAP30BPQ9UHR5 308 aaKnown RBP8.49□□□□□ -1.05
SS18-214ENST00000580003 SPEF1Q9Y4P9 236 aa8.49□□□□□ -1.05
SS18-214ENST00000580003 FAM171A2A8MVW0 826 aa8.48□□□□□ -1.05
SS18-214ENST00000580003 ENDOD1O94919 500 aa8.48□□□□□ -1.05
SS18-214ENST00000580003 HK1P19367 917 aa8.48□□□□□ -1.05
SS18-214ENST00000580003 SCNN1GP51170 649 aa8.48□□□□□ -1.05
SS18-214ENST00000580003 PPP3CAQ08209 521 aa8.48□□□□□ -1.05
SS18-214ENST00000580003 BRDTQ58F21 947 aaPredicted RBP8.48□□□□□ -1.05
SS18-214ENST00000580003 DCAF17Q5H9S7 520 aaPredicted RBP8.48□□□□□ -1.05
SS18-214ENST00000580003 PRAMEF14Q5SWL7 426 aa8.48□□□□□ -1.05
SS18-214ENST00000580003 DOK3Q7L591 496 aa8.48□□□□□ -1.05
SS18-214ENST00000580003 JADE3Q92613 823 aa8.48□□□□□ -1.05
SS18-214ENST00000580003 ASPSCR1Q9BZE9 553 aa8.48□□□□□ -1.05
SS18-214ENST00000580003 CLCA2Q9UQC9 943 aa8.48□□□□□ -1.05
SS18-214ENST00000580003 ZMYM3Q14202 1370 aa8.48□□□□□ -1.05
SS18-214ENST00000580003 PRR5-ARHGAP8B1AHC4 643 aa8.47□□□□□ -1.05
SS18-214ENST00000580003 B5MCH6 92 aa8.47□□□□□ -1.05
SS18-214ENST00000580003 ADCY6O43306 1168 aa8.47□□□□□ -1.05
SS18-214ENST00000580003 NDUFS2O75306 463 aa8.47□□□□□ -1.05
SS18-214ENST00000580003 SLC16A1P53985 500 aa8.47□□□□□ -1.05
SS18-214ENST00000580003 KRT85P78386 507 aa8.47□□□□□ -1.05
SS18-214ENST00000580003 MGAT2Q10469 447 aa8.47□□□□□ -1.05
SS18-214ENST00000580003 PCBP2Q15366 365 aaKnown RBP eCLIP8.47□□□□□ -1.05
SS18-214ENST00000580003 Q6ZVL8 140 aa8.47□□□□□ -1.05
SS18-214ENST00000580003 PQLC1Q8N2U9 271 aa8.47□□□□□ -1.05
SS18-214ENST00000580003 PGBD4Q96DM1 585 aa8.47□□□□□ -1.05
SS18-214ENST00000580003 MNTQ99583 582 aa8.47□□□□□ -1.05
SS18-214ENST00000580003 FLT3LGP49771 235 aa8.46□□□□□ -1.06
SS18-214ENST00000580003 RABGGTBP53611 331 aa8.46□□□□□ -1.06
SS18-214ENST00000580003 METTL24Q5JXM2 366 aa8.46□□□□□ -1.06
SS18-214ENST00000580003 XYLT1Q86Y38 959 aa8.46□□□□□ -1.06
SS18-214ENST00000580003 TMPRSS6Q8IU80 811 aa8.46□□□□□ -1.06
SS18-214ENST00000580003 TRMT2AQ8IZ69 625 aaKnown RBP8.46□□□□□ -1.06
SS18-214ENST00000580003 RPUSD2Q8IZ73 545 aaKnown RBP8.46□□□□□ -1.06
SS18-214ENST00000580003 REPS2Q8NFH8 660 aa8.46□□□□□ -1.06
SS18-214ENST00000580003 NRG4Q8WWG1 115 aa8.46□□□□□ -1.06
SS18-214ENST00000580003 SENP6Q9GZR1 1112 aaPredicted RBP8.46□□□□□ -1.06
SS18-214ENST00000580003 SPON1Q9HCB6 807 aa8.46□□□□□ -1.06
SS18-214ENST00000580003 LANCL2Q9NS86 450 aa8.46□□□□□ -1.06
SS18-214ENST00000580003 TNKSO95271 1327 aa8.46□□□□□ -1.06
SS18-214ENST00000580003 PCDHGA12O60330 932 aa8.45□□□□□ -1.06
SS18-214ENST00000580003 SREBF1P36956 1147 aa8.45□□□□□ -1.06
SS18-214ENST00000580003 FAM47AQ5JRC9 791 aa8.45□□□□□ -1.06
SS18-214ENST00000580003 EFCAB2Q5VUJ9 269 aa8.45□□□□□ -1.06
SS18-214ENST00000580003 GGNQ86UU5 652 aa8.45□□□□□ -1.06
SS18-214ENST00000580003 IL17DQ8TAD2 202 aa8.45□□□□□ -1.06
SS18-214ENST00000580003 HOXB13Q92826 284 aaPredicted RBP8.45□□□□□ -1.06
SS18-214ENST00000580003 TEKT5Q96M29 485 aa8.45□□□□□ -1.06
SS18-214ENST00000580003 C7orf25Q9BPX7 421 aa8.45□□□□□ -1.06
SS18-214ENST00000580003 LSM14BQ9BX40 385 aaKnown RBP8.45□□□□□ -1.06
SS18-214ENST00000580003 SLC13A1Q9BZW2 595 aa8.45□□□□□ -1.06
SS18-214ENST00000580003 PARPBPQ9NWS1 579 aa8.45□□□□□ -1.06
SS18-214ENST00000580003 INTUQ9ULD6 942 aa8.45□□□□□ -1.06
SS18-214ENST00000580003 PCDHGA9Q9Y5G4 932 aaKnown RBP8.45□□□□□ -1.06
SS18-214ENST00000580003 PCDHGA8Q9Y5G5 932 aa8.45□□□□□ -1.06
SS18-214ENST00000580003 PCDHGA7Q9Y5G6 932 aa8.45□□□□□ -1.06
SS18-214ENST00000580003 PCDHGA6Q9Y5G7 932 aa8.45□□□□□ -1.06
SS18-214ENST00000580003 PCDHGA3Q9Y5H0 932 aa8.45□□□□□ -1.06
SS18-214ENST00000580003 KLRG2A4D1S0 409 aaPredicted RBP8.44□□□□□ -1.06
SS18-214ENST00000580003 FZD9O00144 591 aa8.44□□□□□ -1.06
SS18-214ENST00000580003 MATN3O15232 486 aa8.44□□□□□ -1.06
SS18-214ENST00000580003 C5AR1P21730 350 aa8.44□□□□□ -1.06
SS18-214ENST00000580003 EXOSC10Q01780 885 aaKnown RBP8.44□□□□□ -1.06
SS18-214ENST00000580003 PTH1RQ03431 593 aa8.44□□□□□ -1.06
SS18-214ENST00000580003 MFSD14BQ5SR56 506 aa8.44□□□□□ -1.06
SS18-214ENST00000580003 ZNF572Q7Z3I7 529 aaPredicted RBP8.44□□□□□ -1.06
SS18-214ENST00000580003 OR52N2Q8NGI0 321 aa8.44□□□□□ -1.06
SS18-214ENST00000580003 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.44□□□□□ -1.06
SS18-214ENST00000580003 CEP95Q96GE4 821 aa8.44□□□□□ -1.06
SS18-214ENST00000580003 PLEKHG4BQ96PX9 1271 aa8.44□□□□□ -1.06
SS18-214ENST00000580003 CSRNP2Q9H175 543 aa8.44□□□□□ -1.06
SS18-214ENST00000580003 MANSC1Q9H8J5 431 aa8.44□□□□□ -1.06
SS18-214ENST00000580003 TYW1Q9NV66 732 aaKnown RBP8.44□□□□□ -1.06
SS18-214ENST00000580003 MOCS1Q9NZB8 636 aa8.44□□□□□ -1.06
SS18-214ENST00000580003 XDHP47989 1333 aa8.44□□□□□ -1.06
SS18-214ENST00000580003 TBKBP1A7MCY6 615 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms