RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 CLDN3O15551 220 aa19.89■□□□□ 0.77
CCDC40-213ENST00000574933 NPTXRO95502 500 aa19.89■□□□□ 0.77
CCDC40-213ENST00000574933 ADSSP30520 456 aa19.89■□□□□ 0.77
CCDC40-213ENST00000574933 KCNJ6P48051 423 aa19.89■□□□□ 0.77
CCDC40-213ENST00000574933 DEFB103AP81534 67 aa19.89■□□□□ 0.77
CCDC40-213ENST00000574933 ZNF568Q3ZCX4 644 aa19.89■□□□□ 0.77
CCDC40-213ENST00000574933 CAVIN1Q6NZI2 390 aaKnown RBP19.89■□□□□ 0.77
CCDC40-213ENST00000574933 NPAS4Q8IUM7 802 aa19.89■□□□□ 0.77
CCDC40-213ENST00000574933 SMYD4Q8IYR2 804 aaPredicted RBP19.89■□□□□ 0.77
CCDC40-213ENST00000574933 SMG8Q8ND04 991 aaKnown RBP19.89■□□□□ 0.77
CCDC40-213ENST00000574933 IKZF4Q9H2S9 585 aa19.89■□□□□ 0.77
CCDC40-213ENST00000574933 TYW1Q9NV66 732 aaKnown RBP19.89■□□□□ 0.77
CCDC40-213ENST00000574933 TRAF3IP3Q9Y228 551 aa19.89■□□□□ 0.77
CCDC40-213ENST00000574933 IPPQ9Y573 584 aa19.89■□□□□ 0.77
CCDC40-213ENST00000574933 SLC4A7Q9Y6M7 1214 aa19.89■□□□□ 0.77
CCDC40-213ENST00000574933 ZBBXA8MT70 800 aa19.88■□□□□ 0.77
CCDC40-213ENST00000574933 PPP1R3GB7ZBB8 358 aa19.88■□□□□ 0.77
CCDC40-213ENST00000574933 TISP43B9A030 160 aa19.88■□□□□ 0.77
CCDC40-213ENST00000574933 BIN1O00499 593 aa19.88■□□□□ 0.77
CCDC40-213ENST00000574933 KIAA0391O15091 583 aaKnown RBP19.88■□□□□ 0.77
CCDC40-213ENST00000574933 FAM189A1O60320 539 aa19.88■□□□□ 0.77
CCDC40-213ENST00000574933 STAG3L1P0CL83 205 aa19.88■□□□□ 0.77
CCDC40-213ENST00000574933 NFIL3Q16649 462 aa19.88■□□□□ 0.77
CCDC40-213ENST00000574933 CENPPQ6IPU0 288 aa19.88■□□□□ 0.77
CCDC40-213ENST00000574933 FOXR2Q6PJQ5 311 aa19.88■□□□□ 0.77
CCDC40-213ENST00000574933 NELFCDQ8IXH7 590 aa19.88■□□□□ 0.77
CCDC40-213ENST00000574933 GOLGA5Q8TBA6 731 aa19.88■□□□□ 0.77
CCDC40-213ENST00000574933 RNPC3Q96LT9 517 aaKnown RBP19.88■□□□□ 0.77
CCDC40-213ENST00000574933 A0A1W2PPC1 479 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 OGTO15294 1046 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 CD44P16070 742 aaKnown RBP19.87■□□□□ 0.77
CCDC40-213ENST00000574933 GRM5P41594 1212 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 NLRP12P59046 1061 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 POU5F1Q01860 360 aaKnown RBP19.87■□□□□ 0.77
CCDC40-213ENST00000574933 STIM1Q13586 685 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 KYAT1Q16773 422 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 ZCWPW2Q504Y3 356 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 PRPF38BQ5VTL8 546 aaKnown RBP19.87■□□□□ 0.77
CCDC40-213ENST00000574933 ISM2Q6H9L7 571 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 HS2ST1Q7LGA3 356 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 SLC9A9Q8IVB4 645 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 TDHQ8IZJ6 230 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 RSPH1Q8WYR4 309 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 PGBD4Q96DM1 585 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 DHTKD1Q96HY7 919 aaPredicted RBP19.87■□□□□ 0.77
CCDC40-213ENST00000574933 TCHPQ9BT92 498 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 TRIM6Q9C030 488 aaPredicted RBP19.87■□□□□ 0.77
CCDC40-213ENST00000574933 AGPAT3Q9NRZ7 376 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 ANKFY1Q9P2R3 1169 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 NLRC5Q86WI3 1866 aa19.87■□□□□ 0.77
CCDC40-213ENST00000574933 KIAA1671Q9BY89 1806 aa19.86■□□□□ 0.77
CCDC40-213ENST00000574933 MYO9BQ13459 2157 aa19.86■□□□□ 0.77
CCDC40-213ENST00000574933 INPPL1O15357 1258 aa19.86■□□□□ 0.77
CCDC40-213ENST00000574933 LETM1O95202 739 aaPredicted RBP19.86■□□□□ 0.77
CCDC40-213ENST00000574933 MYBPC2Q14324 1141 aa19.86■□□□□ 0.77
CCDC40-213ENST00000574933 CHRDL2Q6WN34 429 aa19.86■□□□□ 0.77
CCDC40-213ENST00000574933 AGMOQ6ZNB7 445 aa19.86■□□□□ 0.77
CCDC40-213ENST00000574933 ZBTB33Q86T24 672 aa19.86■□□□□ 0.77
CCDC40-213ENST00000574933 HACE1Q8IYU2 909 aa19.86■□□□□ 0.77
CCDC40-213ENST00000574933 MLKLQ8NB16 471 aa19.86■□□□□ 0.77
CCDC40-213ENST00000574933 SEMA6BQ9H3T3 888 aa19.86■□□□□ 0.77
CCDC40-213ENST00000574933 NXF3Q9H4D5 531 aaKnown RBP19.86■□□□□ 0.77
CCDC40-213ENST00000574933 RC3H2Q9HBD1 1191 aaKnown RBP19.86■□□□□ 0.77
CCDC40-213ENST00000574933 UBN1Q9NPG3 1134 aa19.86■□□□□ 0.77
CCDC40-213ENST00000574933 RNF19AQ9NV58 838 aa19.86■□□□□ 0.77
CCDC40-213ENST00000574933 DMAC2Q9NW81 257 aa19.86■□□□□ 0.77
CCDC40-213ENST00000574933 MAPK8IP1Q9UQF2 711 aa19.86■□□□□ 0.77
CCDC40-213ENST00000574933 PCDHB7Q9Y5E2 793 aa19.86■□□□□ 0.77
CCDC40-213ENST00000574933 PSMA7O14818 248 aa19.85■□□□□ 0.77
CCDC40-213ENST00000574933 HOXA2O43364 376 aa19.85■□□□□ 0.77
CCDC40-213ENST00000574933 GJB5O95377 273 aa19.85■□□□□ 0.77
CCDC40-213ENST00000574933 LDHAP00338 332 aaKnown RBP19.85■□□□□ 0.77
CCDC40-213ENST00000574933 CCNE1P24864 410 aa19.85■□□□□ 0.77
CCDC40-213ENST00000574933 EDRF1Q3B7T1 1238 aa19.85■□□□□ 0.77
CCDC40-213ENST00000574933 CT47A1Q5JQC4 288 aaPredicted RBP19.85■□□□□ 0.77
CCDC40-213ENST00000574933 ARMCX5Q6P1M9 558 aa19.85■□□□□ 0.77
CCDC40-213ENST00000574933 POMGNT1Q8WZA1 660 aa19.85■□□□□ 0.77
CCDC40-213ENST00000574933 FBXL18Q96ME1 805 aa19.85■□□□□ 0.77
CCDC40-213ENST00000574933 CBWD1Q9BRT8 395 aa19.85■□□□□ 0.77
CCDC40-213ENST00000574933 MSTO1Q9BUK6 570 aa19.85■□□□□ 0.77
CCDC40-213ENST00000574933 RNF39Q9H2S5 420 aa19.85■□□□□ 0.77
CCDC40-213ENST00000574933 AGO2Q9UKV8 859 aaKnown RBP19.85■□□□□ 0.77
CCDC40-213ENST00000574933 LRFN2Q9ULH4 789 aa19.85■□□□□ 0.77
CCDC40-213ENST00000574933 GIT1Q9Y2X7 761 aa19.85■□□□□ 0.77
CCDC40-213ENST00000574933 RANBP2P49792 3224 aaKnown RBP19.84■□□□□ 0.77
CCDC40-213ENST00000574933 CALUO43852 315 aaPredicted RBP19.84■□□□□ 0.77
CCDC40-213ENST00000574933 DGKIO75912 1065 aa19.84■□□□□ 0.77
CCDC40-213ENST00000574933 ADRB2P07550 413 aa19.84■□□□□ 0.77
CCDC40-213ENST00000574933 ITGA4P13612 1032 aa19.84■□□□□ 0.77
CCDC40-213ENST00000574933 ATP2A2P16615 1042 aaKnown RBP19.84■□□□□ 0.77
CCDC40-213ENST00000574933 HTRA4P83105 476 aaPredicted RBP19.84■□□□□ 0.77
CCDC40-213ENST00000574933 HERC6Q8IVU3 1022 aa19.84■□□□□ 0.77
CCDC40-213ENST00000574933 CEP120Q8N960 986 aa19.84■□□□□ 0.77
CCDC40-213ENST00000574933 P2RX5Q93086 422 aa19.84■□□□□ 0.77
CCDC40-213ENST00000574933 ZNF689Q96CS4 500 aaPredicted RBP19.84■□□□□ 0.77
CCDC40-213ENST00000574933 CCDC94Q9BW85 323 aaPredicted RBP19.84■□□□□ 0.77
CCDC40-213ENST00000574933 CPSF3Q9UKF6 684 aaKnown RBP19.84■□□□□ 0.77
CCDC40-213ENST00000574933 HES2Q9Y543 173 aa19.84■□□□□ 0.77
CCDC40-213ENST00000574933 MEIS3P2A8K0S8 358 aa19.83■□□□□ 0.77
CCDC40-213ENST00000574933 CLTAP09496 248 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms