RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 NAP1L4Q99733 375 aaKnown RBP7.48□□□□□ -1.21
VPS53-213ENST00000572334 PAAF1Q9BRP4 392 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 NFKBIZQ9BYH8 718 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 GPR62Q9BZJ7 368 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 CSRNP2Q9H175 543 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 NXF3Q9H4D5 531 aaKnown RBP7.48□□□□□ -1.21
VPS53-213ENST00000572334 TTC12Q9H892 705 aaPredicted RBP7.48□□□□□ -1.21
VPS53-213ENST00000572334 SFXN1Q9H9B4 322 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 GPRC5CQ9NQ84 441 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 CHST7Q9NS84 486 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 ANKEF1Q9NU02 776 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 KANSL3Q9P2N6 904 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 CACNG4Q9UBN1 327 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 PCDHA12Q9UN75 941 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 PRG3Q9Y2Y8 225 aaPredicted RBP7.48□□□□□ -1.21
VPS53-213ENST00000572334 MIA3Q5JRA6 1907 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 ZNF292O60281 2723 aa7.48□□□□□ -1.21
VPS53-213ENST00000572334 COL4A3Q01955 1670 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 OTOGLQ3ZCN5 2332 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 ANK1P16157 1881 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 A0A1B0GUA9 196 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 C2CD2LO14523 706 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 GALR2O43603 387 aaPredicted RBP7.47□□□□□ -1.21
VPS53-213ENST00000572334 MED24O75448 989 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 RFPL2O75678 378 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 DGAT1O75907 488 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 XBP1P17861 261 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 AKAP5P24588 427 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 IGFBP6P24592 240 aaPredicted RBP7.47□□□□□ -1.21
VPS53-213ENST00000572334 KLRC2P26717 231 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 FOSBP53539 338 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 DSG1Q02413 1049 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 MXD4Q14582 209 aaPredicted RBP7.47□□□□□ -1.21
VPS53-213ENST00000572334 PCBP1Q15365 356 aaKnown RBP eCLIP7.47□□□□□ -1.21
VPS53-213ENST00000572334 NAB2Q15742 525 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 CALCRLQ16602 461 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 ECM1Q16610 540 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 CDCA2Q69YH5 1023 aaPredicted RBP7.47□□□□□ -1.21
VPS53-213ENST00000572334 NOTUMQ6P988 496 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 LILRA6Q6PI73 481 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 C15orf39Q6ZRI6 1047 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 CABP7Q86V35 215 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 PPFIBP1Q86W92 1011 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 CATSPER3Q86XQ3 398 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 DIS3L2Q8IYB7 885 aaKnown RBP7.47□□□□□ -1.21
VPS53-213ENST00000572334 EXOC8Q8IYI6 725 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 TDRD5Q8NAT2 981 aaKnown RBP7.47□□□□□ -1.21
VPS53-213ENST00000572334 CNNM3Q8NE01 707 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 RABGGTAQ92696 567 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 ZNF707Q96C28 371 aaPredicted RBP7.47□□□□□ -1.21
VPS53-213ENST00000572334 CCDC51Q96ER9 411 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 B3GALT6Q96L58 329 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 PRRX2Q99811 253 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 RHOBTB2Q9BYZ6 727 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 POLR3FQ9H1D9 316 aaPredicted RBP7.47□□□□□ -1.21
VPS53-213ENST00000572334 FZD8Q9H461 694 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 MAN1C1Q9NR34 630 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 MRPL17Q9NRX2 175 aaKnown RBP7.47□□□□□ -1.21
VPS53-213ENST00000572334 DBR1Q9UK59 544 aaKnown RBP7.47□□□□□ -1.21
VPS53-213ENST00000572334 USP20Q9Y2K6 914 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 GIT1Q9Y2X7 761 aa7.47□□□□□ -1.21
VPS53-213ENST00000572334 ZMYM2Q9UBW7 1377 aa7.46□□□□□ -1.21
VPS53-213ENST00000572334 PATJQ8NI35 1801 aa7.46□□□□□ -1.21
VPS53-213ENST00000572334 F5P12259 2224 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 PROB1E7EW31 1015 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 H0Y858 1186 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 INO80B-WBP1J3KQ70 363 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 PTGESO14684 152 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 PI15O43692 258 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 NARSO43776 548 aaKnown RBP7.46□□□□□ -1.22
VPS53-213ENST00000572334 NEMFO60524 1076 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 ERLIN2O94905 339 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 BAG4O95429 457 aaKnown RBP7.46□□□□□ -1.22
VPS53-213ENST00000572334 NPTXRO95502 500 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 SPATA31D3P0C874 917 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 MYBP10242 640 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 XRCC6P12956 609 aaKnown RBP eCLIP7.46□□□□□ -1.22
VPS53-213ENST00000572334 TXKP42681 527 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 OR1G1P47890 313 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 BMS1Q14692 1282 aaKnown RBP7.46□□□□□ -1.22
VPS53-213ENST00000572334 ANKRD1Q15327 319 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 FAM187BQ17R55 369 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 FUT10Q6P4F1 479 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 SPATA31D4Q6ZUB0 917 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 ZBTB33Q86T24 672 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 PLCD3Q8N3E9 789 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 C4orf32Q8N8J7 132 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 RSAD2Q8WXG1 361 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 WASF1Q92558 559 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 FAM193BQ96PV7 902 aaPredicted RBP7.46□□□□□ -1.22
VPS53-213ENST00000572334 MYADMQ96S97 322 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 APOL6Q9BWW8 343 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 EMILIN2Q9BXX0 1053 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 CCDC113Q9H0I3 377 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 KCNK12Q9HB15 430 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 WDR6Q9NNW5 1121 aaKnown RBP7.46□□□□□ -1.22
VPS53-213ENST00000572334 UBN1Q9NPG3 1134 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 KLK14Q9P0G3 267 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 STK39Q9UEW8 545 aa7.46□□□□□ -1.22
VPS53-213ENST00000572334 GPR179Q6PRD1 2367 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms