RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 A0A087X0B3 334 aa15.38■□□□□ 0.05
CLN3-235ENST00000568497 DENND3A2RUS2 1198 aa15.38■□□□□ 0.05
CLN3-235ENST00000568497 SFI1A8K8P3 1242 aa15.38■□□□□ 0.05
CLN3-235ENST00000568497 DKC1O60832 514 aaKnown RBP eCLIP15.38■□□□□ 0.05
CLN3-235ENST00000568497 DARSP14868 501 aaKnown RBP15.38■□□□□ 0.05
CLN3-235ENST00000568497 PRPHP41219 470 aa15.38■□□□□ 0.05
CLN3-235ENST00000568497 CAPSQ13938 189 aa15.38■□□□□ 0.05
CLN3-235ENST00000568497 STK38Q15208 465 aa15.38■□□□□ 0.05
CLN3-235ENST00000568497 ATAT1Q5SQI0 421 aa15.38■□□□□ 0.05
CLN3-235ENST00000568497 C12orf76Q8N812 135 aaPredicted RBP15.38■□□□□ 0.05
CLN3-235ENST00000568497 RNF149Q8NC42 400 aa15.38■□□□□ 0.05
CLN3-235ENST00000568497 SLC7A3Q8WY07 619 aa15.38■□□□□ 0.05
CLN3-235ENST00000568497 ACSF2Q96CM8 615 aaPredicted RBP15.38■□□□□ 0.05
CLN3-235ENST00000568497 NACC1Q96RE7 527 aa15.38■□□□□ 0.05
CLN3-235ENST00000568497 ADAM2Q99965 735 aa15.38■□□□□ 0.05
CLN3-235ENST00000568497 ATP6V0A4Q9HBG4 840 aa15.38■□□□□ 0.05
CLN3-235ENST00000568497 RNF19AQ9NV58 838 aa15.38■□□□□ 0.05
CLN3-235ENST00000568497 OTOGLQ3ZCN5 2332 aa15.38■□□□□ 0.05
CLN3-235ENST00000568497 TTLL13PA6NNM8 815 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 EOMESO95936 686 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 EDN1P05305 212 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 PLCG1P19174 1290 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 ARL2P36404 184 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 RFC5P40937 340 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 KRT17Q04695 432 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 TDGQ13569 410 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 PDIA5Q14554 519 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 MCM6Q14566 821 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 HAUS3Q68CZ6 603 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 TMEM87AQ8NBN3 555 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 RNF169Q8NCN4 708 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 PSPC1Q8WXF1 523 aaKnown RBP15.37■□□□□ 0.05
CLN3-235ENST00000568497 CPB2Q96IY4 423 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 IFT122Q9HBG6 1241 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 GDPD2Q9HCC8 539 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 DUSP12Q9UNI6 340 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 USTQ9Y2C2 406 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 KDM3AQ9Y4C1 1321 aa15.37■□□□□ 0.05
CLN3-235ENST00000568497 SPDYE4A6NLX3 237 aa15.36■□□□□ 0.05
CLN3-235ENST00000568497 MEIS3P2A8K0S8 358 aa15.36■□□□□ 0.05
CLN3-235ENST00000568497 LAD1O00515 517 aa15.36■□□□□ 0.05
CLN3-235ENST00000568497 B4GALT5O43286 388 aa15.36■□□□□ 0.05
CLN3-235ENST00000568497 FGFR1P11362 822 aa15.36■□□□□ 0.05
CLN3-235ENST00000568497 EIF4BP23588 611 aaKnown RBP15.36■□□□□ 0.05
CLN3-235ENST00000568497 PBX3P40426 434 aa15.36■□□□□ 0.05
CLN3-235ENST00000568497 DNM2P50570 870 aa15.36■□□□□ 0.05
CLN3-235ENST00000568497 SMC1AQ14683 1233 aaKnown RBP15.36■□□□□ 0.05
CLN3-235ENST00000568497 TMEM119Q4V9L6 283 aa15.36■□□□□ 0.05
CLN3-235ENST00000568497 KIAA1841Q6NSI8 718 aa15.36■□□□□ 0.05
CLN3-235ENST00000568497 LPPQ93052 612 aa15.36■□□□□ 0.05
CLN3-235ENST00000568497 ZSCAN16Q9H4T2 348 aaPredicted RBP15.36■□□□□ 0.05
CLN3-235ENST00000568497 CWH43Q9H720 699 aa15.36■□□□□ 0.05
CLN3-235ENST00000568497 C1orf112Q9NSG2 853 aa15.36■□□□□ 0.05
CLN3-235ENST00000568497 BAHCC1Q9P281 2608 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 LRRIQ4A6NIV6 560 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 CFHP08603 1231 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 PLA2G4BP0C869 781 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 CYP11B2P19099 503 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 NCLP19338 710 aaKnown RBP15.35■□□□□ 0.05
CLN3-235ENST00000568497 PPM1AP35813 382 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 NASPP49321 788 aaPredicted RBP15.35■□□□□ 0.05
CLN3-235ENST00000568497 BECN1Q14457 450 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 DSC3Q14574 896 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 SLC39A14Q15043 492 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 KIAA0319Q5VV43 1072 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 ARL6IP4Q66PJ3 421 aaKnown RBP15.35■□□□□ 0.05
CLN3-235ENST00000568497 KANK3Q6NY19 840 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 DAW1Q8N136 415 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 PDILTQ8N807 584 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 LINC00301Q8NCQ3 95 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 RASSF8Q8NHQ8 419 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 STAMQ92783 540 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 ZNF558Q96NG5 402 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 GCOM2Q9BZD3 368 aaPredicted RBP15.35■□□□□ 0.05
CLN3-235ENST00000568497 RAB34Q9BZG1 259 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 BLOC1S4Q9NUP1 217 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 NCDNQ9UBB6 729 aa15.35■□□□□ 0.05
CLN3-235ENST00000568497 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.34■□□□□ 0.05
CLN3-235ENST00000568497 INO80B-WBP1J3KQ70 363 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 CLASP2O75122 1294 aaKnown RBP15.34■□□□□ 0.05
CLN3-235ENST00000568497 HIP1RO75146 1068 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 DGAT1O75907 488 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 SDHBP21912 280 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 UBA7P41226 1012 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 ARSHQ5FYA8 562 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 RINT1Q6NUQ1 792 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 KCNT2Q6UVM3 1135 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 CCDC149Q6ZUS6 474 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 SLC24A5Q71RS6 500 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 CATSPER4Q7RTX7 472 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 CDK5RAP3Q96JB5 506 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 INO80BQ9C086 356 aaPredicted RBP15.34■□□□□ 0.05
CLN3-235ENST00000568497 RGS18Q9NS28 235 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 DZANK1Q9NVP4 752 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 CDV3Q9UKY7 258 aaKnown RBP15.34■□□□□ 0.05
CLN3-235ENST00000568497 DNM3Q9UQ16 869 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 PIN4Q9Y237 131 aaKnown RBP15.34■□□□□ 0.05
CLN3-235ENST00000568497 SRPRBQ9Y5M8 271 aaKnown RBP15.34■□□□□ 0.05
CLN3-235ENST00000568497 TCHHQ07283 1943 aa15.34■□□□□ 0.05
CLN3-235ENST00000568497 C2orf71A6NGG8 1288 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms