RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 KIAA0319Q5VV43 1072 aa17.81■□□□□ 0.44
CLN3-229ENST00000567963 CDCA2Q69YH5 1023 aaPredicted RBP17.81■□□□□ 0.44
CLN3-229ENST00000567963 POTEGQ6S5H5 508 aa17.81■□□□□ 0.44
CLN3-229ENST00000567963 PPP4R3CPQ6ZMV5 832 aa17.81■□□□□ 0.44
CLN3-229ENST00000567963 ZDHHC14Q8IZN3 488 aa17.81■□□□□ 0.44
CLN3-229ENST00000567963 PLCD3Q8N3E9 789 aa17.81■□□□□ 0.44
CLN3-229ENST00000567963 ERMNQ8TAM6 284 aa17.81■□□□□ 0.44
CLN3-229ENST00000567963 ZSCAN31Q96LW9 406 aaPredicted RBP17.81■□□□□ 0.44
CLN3-229ENST00000567963 FZD8Q9H461 694 aa17.81■□□□□ 0.44
CLN3-229ENST00000567963 PRMT7Q9NVM4 692 aaPredicted RBP17.81■□□□□ 0.44
CLN3-229ENST00000567963 SPDYE4A6NLX3 237 aa17.8■□□□□ 0.44
CLN3-229ENST00000567963 F8W810 466 aa17.8■□□□□ 0.44
CLN3-229ENST00000567963 RBM25P49756 843 aaKnown RBP17.8■□□□□ 0.44
CLN3-229ENST00000567963 HMGN5P82970 282 aaKnown RBP17.8■□□□□ 0.44
CLN3-229ENST00000567963 MTMR3Q13615 1198 aa17.8■□□□□ 0.44
CLN3-229ENST00000567963 FAM187BQ17R55 369 aa17.8■□□□□ 0.44
CLN3-229ENST00000567963 PADI6Q6TGC4 694 aa17.8■□□□□ 0.44
CLN3-229ENST00000567963 NOSTRINQ8IVI9 506 aa17.8■□□□□ 0.44
CLN3-229ENST00000567963 UBALD2Q8IYN6 164 aa17.8■□□□□ 0.44
CLN3-229ENST00000567963 TDRD5Q8NAT2 981 aaKnown RBP17.8■□□□□ 0.44
CLN3-229ENST00000567963 KIF2CQ99661 725 aa17.8■□□□□ 0.44
CLN3-229ENST00000567963 COLEC11Q9BWP8 271 aa17.8■□□□□ 0.44
CLN3-229ENST00000567963 CHST7Q9NS84 486 aa17.8■□□□□ 0.44
CLN3-229ENST00000567963 PARP2Q9UGN5 583 aa17.8■□□□□ 0.44
CLN3-229ENST00000567963 LIMD1Q9UGP4 676 aa17.8■□□□□ 0.44
CLN3-229ENST00000567963 TEX28O15482 410 aa17.79■□□□□ 0.44
CLN3-229ENST00000567963 BRD1O95696 1058 aa17.79■□□□□ 0.44
CLN3-229ENST00000567963 ADH1AP07327 375 aa17.79■□□□□ 0.44
CLN3-229ENST00000567963 MUTP22033 750 aa17.79■□□□□ 0.44
CLN3-229ENST00000567963 GLUD2P49448 558 aa17.79■□□□□ 0.44
CLN3-229ENST00000567963 DSG1Q02413 1049 aa17.79■□□□□ 0.44
CLN3-229ENST00000567963 TTC38Q5R3I4 469 aa17.79■□□□□ 0.44
CLN3-229ENST00000567963 C15orf39Q6ZRI6 1047 aa17.79■□□□□ 0.44
CLN3-229ENST00000567963 ZBTB8OSQ8IWT0 167 aa17.79■□□□□ 0.44
CLN3-229ENST00000567963 PRSS33Q8NF86 280 aa17.79■□□□□ 0.44
CLN3-229ENST00000567963 PRRX2Q99811 253 aa17.79■□□□□ 0.44
CLN3-229ENST00000567963 RXFP1Q9HBX9 757 aa17.79■□□□□ 0.44
CLN3-229ENST00000567963 SH2B1Q9NRF2 756 aaPredicted RBP17.79■□□□□ 0.44
CLN3-229ENST00000567963 KLK14Q9P0G3 267 aa17.79■□□□□ 0.44
CLN3-229ENST00000567963 DENND4AQ7Z401 1863 aa17.79■□□□□ 0.44
CLN3-229ENST00000567963 ZMYM2Q9UBW7 1377 aa17.79■□□□□ 0.44
CLN3-229ENST00000567963 TTLL13PA6NNM8 815 aa17.78■□□□□ 0.44
CLN3-229ENST00000567963 ASGR2P07307 311 aa17.78■□□□□ 0.44
CLN3-229ENST00000567963 CYP11B2P19099 503 aa17.78■□□□□ 0.44
CLN3-229ENST00000567963 TRAPPC10P48553 1259 aa17.78■□□□□ 0.44
CLN3-229ENST00000567963 MRE11P49959 708 aa17.78■□□□□ 0.44
CLN3-229ENST00000567963 GRIK3Q13003 919 aa17.78■□□□□ 0.44
CLN3-229ENST00000567963 GNL2Q13823 731 aaKnown RBP17.78■□□□□ 0.44
CLN3-229ENST00000567963 KMT2EQ8IZD2 1858 aa17.78■□□□□ 0.44
CLN3-229ENST00000567963 C4orf32Q8N8J7 132 aa17.78■□□□□ 0.44
CLN3-229ENST00000567963 FAM184AQ8NB25 1140 aa17.78■□□□□ 0.44
CLN3-229ENST00000567963 BSNDQ8WZ55 320 aa17.78■□□□□ 0.44
CLN3-229ENST00000567963 GPR62Q9BZJ7 368 aa17.78■□□□□ 0.44
CLN3-229ENST00000567963 C2orf40Q9H1Z8 148 aa17.78■□□□□ 0.44
CLN3-229ENST00000567963 MAN1C1Q9NR34 630 aa17.78■□□□□ 0.44
CLN3-229ENST00000567963 C2orf16Q68DN1 1984 aa17.78■□□□□ 0.44
CLN3-229ENST00000567963 ARHGEF35A5YM69 484 aa17.77■□□□□ 0.44
CLN3-229ENST00000567963 PDGFBP01127 241 aaPredicted RBP17.77■□□□□ 0.44
CLN3-229ENST00000567963 AVPR2P30518 371 aa17.77■□□□□ 0.44
CLN3-229ENST00000567963 FXR2P51116 673 aaKnown RBP eCLIP17.77■□□□□ 0.44
CLN3-229ENST00000567963 VCPP55072 806 aaKnown RBP17.77■□□□□ 0.44
CLN3-229ENST00000567963 ECM1Q16610 540 aa17.77■□□□□ 0.44
CLN3-229ENST00000567963 HAUS3Q68CZ6 603 aa17.77■□□□□ 0.44
CLN3-229ENST00000567963 CCDC149Q6ZUS6 474 aa17.77■□□□□ 0.44
CLN3-229ENST00000567963 DPP7Q9UHL4 492 aa17.77■□□□□ 0.44
CLN3-229ENST00000567963 ADAM28Q9UKQ2 775 aa17.77■□□□□ 0.44
CLN3-229ENST00000567963 PLXNA3P51805 1871 aa17.77■□□□□ 0.44
CLN3-229ENST00000567963 ZDBF2Q9HCK1 2354 aa17.77■□□□□ 0.43
CLN3-229ENST00000567963 PIEZO1Q92508 2521 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 CCDC195A0A1B0GUA6 201 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 N4BP3O15049 544 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 GLUD1P00367 558 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 U2AF2P26368 475 aaKnown RBP eCLIP17.76■□□□□ 0.43
CLN3-229ENST00000567963 NAMPTP43490 491 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 PTPN5P54829 565 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 PRPF4BQ13523 1007 aaKnown RBP17.76■□□□□ 0.43
CLN3-229ENST00000567963 NBR1Q14596 966 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 MAPK6Q16659 721 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 USP41Q3LFD5 358 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 FUT10Q6P4F1 479 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 OTOP3Q7RTS5 596 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 GPR65Q8IYL9 337 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 CMASQ8NFW8 434 aaPredicted RBP17.76■□□□□ 0.43
CLN3-229ENST00000567963 RABGGTAQ92696 567 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 ACSF2Q96CM8 615 aaPredicted RBP17.76■□□□□ 0.43
CLN3-229ENST00000567963 B3GALT6Q96L58 329 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 CCDC113Q9H0I3 377 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 SMOC2Q9H3U7 446 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 PDZD7Q9H5P4 517 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 NOL7Q9UMY1 257 aaKnown RBP17.76■□□□□ 0.43
CLN3-229ENST00000567963 USP34Q70CQ2 3546 aa17.76■□□□□ 0.43
CLN3-229ENST00000567963 ACKR2O00590 384 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 C1RP00736 705 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 CCT6AP40227 531 aaKnown RBP17.75■□□□□ 0.43
CLN3-229ENST00000567963 TCF15Q12870 199 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 PDIA5Q14554 519 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 PAAF1Q9BRP4 392 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 SNTG2Q9NY99 539 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 LRWD1Q9UFC0 647 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 MTCL1Q9Y4B5 1905 aaKnown RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms