RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 PRPHP41219 470 aa24.82■■□□□ 1.56
CLN3-215ENST00000565236 RILPL1Q5EBL4 403 aa24.82■■□□□ 1.56
CLN3-215ENST00000565236 SLC22A17Q8WUG5 538 aa24.82■■□□□ 1.56
CLN3-215ENST00000565236 KIFAP3Q92845 792 aa24.82■■□□□ 1.56
CLN3-215ENST00000565236 COLEC11Q9BWP8 271 aa24.82■■□□□ 1.56
CLN3-215ENST00000565236 POLD4Q9HCU8 107 aa24.82■■□□□ 1.56
CLN3-215ENST00000565236 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.82■■□□□ 1.56
CLN3-215ENST00000565236 KLK14Q9P0G3 267 aa24.82■■□□□ 1.56
CLN3-215ENST00000565236 TDRD15B5MCY1 1934 aaKnown RBP24.81■■□□□ 1.56
CLN3-215ENST00000565236 ACKR2O00590 384 aa24.81■■□□□ 1.56
CLN3-215ENST00000565236 SOD2P04179 222 aa24.81■■□□□ 1.56
CLN3-215ENST00000565236 PRKCBP05771 671 aa24.81■■□□□ 1.56
CLN3-215ENST00000565236 RARS2Q5T160 578 aaKnown RBP24.81■■□□□ 1.56
CLN3-215ENST00000565236 EDAQ92838 391 aa24.81■■□□□ 1.56
CLN3-215ENST00000565236 RIPOR3Q96MK2 946 aa24.81■■□□□ 1.56
CLN3-215ENST00000565236 NECTIN4Q96NY8 510 aa24.81■■□□□ 1.56
CLN3-215ENST00000565236 KLHL5Q96PQ7 755 aa24.81■■□□□ 1.56
CLN3-215ENST00000565236 RPS6KC1Q96S38 1066 aa24.81■■□□□ 1.56
CLN3-215ENST00000565236 MARCH5Q9NX47 278 aa24.81■■□□□ 1.56
CLN3-215ENST00000565236 SSX2IPQ9Y2D8 614 aa24.81■■□□□ 1.56
CLN3-215ENST00000565236 TTLL13PA6NNM8 815 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 PP2D1A8MPX8 630 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 C2CD2LO14523 706 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 URODP06132 367 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 CNPP09543 421 aaKnown RBP24.8■■□□□ 1.56
CLN3-215ENST00000565236 MTHFRP42898 656 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 EFNA5P52803 228 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 IL17AQ16552 155 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 CABP7Q86V35 215 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 C12orf76Q8N812 135 aaPredicted RBP24.8■■□□□ 1.56
CLN3-215ENST00000565236 GSTCDQ8NEC7 633 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 ADPGKQ9BRR6 497 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 CCDC113Q9H0I3 377 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 PDZD7Q9H5P4 517 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 CDH22Q9UJ99 828 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 SMC3Q9UQE7 1217 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 NR2E1Q9Y466 385 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 ZMYM2Q9UBW7 1377 aa24.8■■□□□ 1.56
CLN3-215ENST00000565236 SPDYE4A6NLX3 237 aa24.79■■□□□ 1.56
CLN3-215ENST00000565236 E9PMD0 336 aa24.79■■□□□ 1.56
CLN3-215ENST00000565236 LILRB3O75022 631 aa24.79■■□□□ 1.56
CLN3-215ENST00000565236 CDC25AP30304 524 aa24.79■■□□□ 1.56
CLN3-215ENST00000565236 GRIK3Q13003 919 aa24.79■■□□□ 1.56
CLN3-215ENST00000565236 ATAT1Q5SQI0 421 aa24.79■■□□□ 1.56
CLN3-215ENST00000565236 TAS1R1Q7RTX1 841 aa24.79■■□□□ 1.56
CLN3-215ENST00000565236 HERC2P3Q9BVR0 1158 aa24.79■■□□□ 1.56
CLN3-215ENST00000565236 TSHZ2Q9NRE2 1034 aa24.79■■□□□ 1.56
CLN3-215ENST00000565236 USP20Q9Y2K6 914 aa24.79■■□□□ 1.56
CLN3-215ENST00000565236 ARIH1Q9Y4X5 557 aaPredicted RBP24.79■■□□□ 1.56
CLN3-215ENST00000565236 SP100P23497 879 aaPredicted RBP24.78■■□□□ 1.56
CLN3-215ENST00000565236 KIAA1841Q6NSI8 718 aa24.78■■□□□ 1.56
CLN3-215ENST00000565236 KANK3Q6NY19 840 aa24.78■■□□□ 1.56
CLN3-215ENST00000565236 FBXL18Q96ME1 805 aa24.78■■□□□ 1.56
CLN3-215ENST00000565236 TBC1D32Q96NH3 1257 aa24.78■■□□□ 1.56
CLN3-215ENST00000565236 KIFC3Q9BVG8 833 aa24.78■■□□□ 1.56
CLN3-215ENST00000565236 POMKQ9H5K3 350 aa24.78■■□□□ 1.56
CLN3-215ENST00000565236 SNTG2Q9NY99 539 aa24.78■■□□□ 1.56
CLN3-215ENST00000565236 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.78■■□□□ 1.56
CLN3-215ENST00000565236 WEE2P0C1S8 567 aa24.77■■□□□ 1.56
CLN3-215ENST00000565236 GLUD2P49448 558 aa24.77■■□□□ 1.56
CLN3-215ENST00000565236 CLCN4P51793 760 aa24.77■■□□□ 1.56
CLN3-215ENST00000565236 ATP2C1P98194 919 aaPredicted RBP24.77■■□□□ 1.56
CLN3-215ENST00000565236 FAM122AQ96E09 287 aa24.77■■□□□ 1.56
CLN3-215ENST00000565236 CCDC169A6NNP5 214 aa24.76■■□□□ 1.55
CLN3-215ENST00000565236 F8W810 466 aa24.76■■□□□ 1.55
CLN3-215ENST00000565236 K7ERI5 159 aa24.76■■□□□ 1.55
CLN3-215ENST00000565236 ZXDAP98168 799 aa24.76■■□□□ 1.55
CLN3-215ENST00000565236 ZRSR1Q15695 479 aaKnown RBP24.76■■□□□ 1.55
CLN3-215ENST00000565236 KIAA0319Q5VV43 1072 aa24.76■■□□□ 1.55
CLN3-215ENST00000565236 LARP1BQ659C4 914 aaKnown RBP24.76■■□□□ 1.55
CLN3-215ENST00000565236 TMC5Q6UXY8 1006 aa24.76■■□□□ 1.55
CLN3-215ENST00000565236 MMTAG2Q9BU76 263 aaKnown RBP24.76■■□□□ 1.55
CLN3-215ENST00000565236 SFXN1Q9H9B4 322 aa24.76■■□□□ 1.55
CLN3-215ENST00000565236 DAXXQ9UER7 740 aaPredicted RBP24.76■■□□□ 1.55
CLN3-215ENST00000565236 TADA2AO75478 443 aa24.75■■□□□ 1.55
CLN3-215ENST00000565236 EFEMP2O95967 443 aa24.75■■□□□ 1.55
CLN3-215ENST00000565236 EDN1P05305 212 aa24.75■■□□□ 1.55
CLN3-215ENST00000565236 ADH1AP07327 375 aa24.75■■□□□ 1.55
CLN3-215ENST00000565236 PLA2G5P39877 138 aa24.75■■□□□ 1.55
CLN3-215ENST00000565236 PEX3P56589 373 aa24.75■■□□□ 1.55
CLN3-215ENST00000565236 DSG1Q02413 1049 aa24.75■■□□□ 1.55
CLN3-215ENST00000565236 DCAF4L1Q3SXM0 396 aa24.75■■□□□ 1.55
CLN3-215ENST00000565236 EEF1DP3Q658K8 133 aa24.75■■□□□ 1.55
CLN3-215ENST00000565236 TRIM67Q6ZTA4 783 aa24.75■■□□□ 1.55
CLN3-215ENST00000565236 HFE2Q6ZVN8 426 aa24.75■■□□□ 1.55
CLN3-215ENST00000565236 RNF168Q8IYW5 571 aaPredicted RBP24.75■■□□□ 1.55
CLN3-215ENST00000565236 RABGGTAQ92696 567 aa24.75■■□□□ 1.55
CLN3-215ENST00000565236 ADAM28Q9UKQ2 775 aa24.75■■□□□ 1.55
CLN3-215ENST00000565236 TEX28O15482 410 aa24.74■■□□□ 1.55
CLN3-215ENST00000565236 HIP1RO75146 1068 aa24.74■■□□□ 1.55
CLN3-215ENST00000565236 RECQL4O94761 1208 aa24.74■■□□□ 1.55
CLN3-215ENST00000565236 THP07101 528 aa24.74■■□□□ 1.55
CLN3-215ENST00000565236 NPTX2P47972 431 aa24.74■■□□□ 1.55
CLN3-215ENST00000565236 TUSC3Q13454 348 aa24.74■■□□□ 1.55
CLN3-215ENST00000565236 USP41Q3LFD5 358 aa24.74■■□□□ 1.55
CLN3-215ENST00000565236 NT5DC1Q5TFE4 455 aa24.74■■□□□ 1.55
CLN3-215ENST00000565236 ATF7IP2Q5U623 682 aa24.74■■□□□ 1.55
CLN3-215ENST00000565236 RINT1Q6NUQ1 792 aa24.74■■□□□ 1.55
CLN3-215ENST00000565236 FUT10Q6P4F1 479 aa24.74■■□□□ 1.55
CLN3-215ENST00000565236 APBB1IPQ7Z5R6 666 aaPredicted RBP24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms