RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 PAAF1Q9BRP4 392 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 TEKT3Q9BXF9 490 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 DHX33Q9H6R0 707 aaKnown RBP11.63□□□□□ -0.55
SF3B3-204ENST00000563739 LTB4R2Q9NPC1 389 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 XPNPEP1Q9NQW7 623 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 ZDHHC7Q9NXF8 308 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 FBXO4Q9UKT5 387 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 VAV3Q9UKW4 847 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 IPPQ9Y573 584 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 COL4A3BPQ9Y5P4 624 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 ZFYVE26Q68DK2 2539 aa11.63□□□□□ -0.55
SF3B3-204ENST00000563739 FAM208BQ5VWN6 2430 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 NCANO14594 1321 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 TRIP11Q15643 1979 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 DCDC2BA2VCK2 349 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 ARL5CA6NH57 179 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 C1RP00736 705 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 ADRB1P08588 477 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 OR1G1P47890 313 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 Q4G0T1 1027 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 FUT10Q6P4F1 479 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 PRSS55Q6UWB4 352 aaPredicted RBP11.62□□□□□ -0.55
SF3B3-204ENST00000563739 SKAP1Q86WV1 359 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 TMEM87AQ8NBN3 555 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 RDM1Q8NG50 284 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 URGCPQ8TCY9 931 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 STAMQ92783 540 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 PGBD4Q96DM1 585 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 NXF3Q9H4D5 531 aaKnown RBP11.62□□□□□ -0.55
SF3B3-204ENST00000563739 PLEKHA4Q9H4M7 779 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 VPS54Q9P1Q0 977 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 FNIP2Q9P278 1114 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 PCDHGA2Q9Y5H1 932 aa11.62□□□□□ -0.55
SF3B3-204ENST00000563739 PDCD11Q14690 1871 aaKnown RBP11.61□□□□□ -0.55
SF3B3-204ENST00000563739 CYP3A7-CYP3A51PA0A087WV96 503 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 SPDYE4A6NLX3 237 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 PRPF3O43395 683 aaKnown RBP11.61□□□□□ -0.55
SF3B3-204ENST00000563739 SLC37A4O43826 429 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 ALDH2P05091 517 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 CYP3A7P24462 503 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 NONOQ15233 471 aaKnown RBP eCLIP11.61□□□□□ -0.55
SF3B3-204ENST00000563739 NAB2Q15742 525 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 TSGA10IPQ3SY00 556 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 DHX32Q7L7V1 743 aaKnown RBP11.61□□□□□ -0.55
SF3B3-204ENST00000563739 MIER3Q7Z3K6 550 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 GRASPQ7Z6J2 395 aaPredicted RBP11.61□□□□□ -0.55
SF3B3-204ENST00000563739 PRPF31Q8WWY3 499 aaKnown RBP11.61□□□□□ -0.55
SF3B3-204ENST00000563739 FGF13Q92913 245 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 TMEM143Q96AN5 459 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 CLSTN3Q9BQT9 956 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 OSBPL6Q9BZF3 934 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 PLA2G2FQ9BZM2 168 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 C6orf50Q9HD87 102 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 BMP2KQ9NSY1 1161 aaPredicted RBP11.61□□□□□ -0.55
SF3B3-204ENST00000563739 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.61□□□□□ -0.55
SF3B3-204ENST00000563739 STK39Q9UEW8 545 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 CDH7Q9ULB5 785 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 LAMA1P25391 3075 aa11.61□□□□□ -0.55
SF3B3-204ENST00000563739 ZBTB39O15060 712 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 GAS2O43903 313 aaKnown RBP11.6□□□□□ -0.55
SF3B3-204ENST00000563739 HOXB3P14651 431 aaPredicted RBP11.6□□□□□ -0.55
SF3B3-204ENST00000563739 FSHRP23945 695 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 FCARP24071 287 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 HOXC13P31276 330 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 CSTF1Q05048 431 aaKnown RBP11.6□□□□□ -0.55
SF3B3-204ENST00000563739 LAMTOR4Q0VGL1 99 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 WDR44Q5JSH3 913 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 SRGAP1Q7Z6B7 1085 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 IFNLR1Q8IU57 520 aaPredicted RBP11.6□□□□□ -0.55
SF3B3-204ENST00000563739 NPAS3Q8IXF0 933 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 GPR65Q8IYL9 337 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 TBCKQ8TEA7 893 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 CPB2Q96IY4 423 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 KXD1Q9BQD3 176 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 AGXT2Q9BYV1 514 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 INO80BQ9C086 356 aaPredicted RBP11.6□□□□□ -0.55
SF3B3-204ENST00000563739 ANO2Q9NQ90 1003 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 SPATA6Q9NWH7 488 aaPredicted RBP11.6□□□□□ -0.55
SF3B3-204ENST00000563739 HCFC1R1Q9NWW0 138 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 NCDNQ9UBB6 729 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 MAST4O15021 2626 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 FLNBO75369 2602 aaKnown RBP11.6□□□□□ -0.55
SF3B3-204ENST00000563739 GREB1Q4ZG55 1949 aa11.6□□□□□ -0.55
SF3B3-204ENST00000563739 EML5Q05BV3 1969 aa11.59□□□□□ -0.55
SF3B3-204ENST00000563739 KIF26AQ9ULI4 1882 aaPredicted RBP11.59□□□□□ -0.55
SF3B3-204ENST00000563739 RALGAPA1Q6GYQ0 2036 aa11.59□□□□□ -0.55
SF3B3-204ENST00000563739 FAM170BA6NMN3 283 aa11.59□□□□□ -0.55
SF3B3-204ENST00000563739 DDX11L8A8MPP1 907 aa11.59□□□□□ -0.55
SF3B3-204ENST00000563739 B4GALT5O43286 388 aa11.59□□□□□ -0.55
SF3B3-204ENST00000563739 ITGA4P13612 1032 aa11.59□□□□□ -0.55
SF3B3-204ENST00000563739 RFX1P22670 979 aa11.59□□□□□ -0.55
SF3B3-204ENST00000563739 USP11P51784 963 aa11.59□□□□□ -0.55
SF3B3-204ENST00000563739 CDC42EP1Q00587 391 aa11.59□□□□□ -0.55
SF3B3-204ENST00000563739 PRKCQQ04759 706 aa11.59□□□□□ -0.55
SF3B3-204ENST00000563739 MBTD1Q05BQ5 628 aa11.59□□□□□ -0.55
SF3B3-204ENST00000563739 SPIRE1Q08AE8 756 aa11.59□□□□□ -0.55
SF3B3-204ENST00000563739 UBXN2BQ14CS0 331 aa11.59□□□□□ -0.55
SF3B3-204ENST00000563739 ST3GAL2Q16842 350 aa11.59□□□□□ -0.55
SF3B3-204ENST00000563739 SLC5A9Q2M3M2 681 aa11.59□□□□□ -0.55
SF3B3-204ENST00000563739 SLC44A4Q53GD3 710 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms