RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 GNAT2P19087 354 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 FLT3LGP49771 235 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 IGBP1P78318 339 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 PPP3CAQ08209 521 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 SP140Q13342 867 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 ACAP1Q15027 740 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 TMEM240Q5SV17 173 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 SPTY2D1Q68D10 685 aaPredicted RBP4.46□□□□□ -1.7
VPS35-203ENST00000562420 DRICH1Q6PGQ1 229 aaPredicted RBP4.46□□□□□ -1.7
VPS35-203ENST00000562420 GPRIN1Q7Z2K8 1008 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 FAM83AQ86UY5 434 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 OR5M3Q8NGP4 307 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 CASKIN2Q8WXE0 1202 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 ST8SIA2Q92186 375 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 CYFIP2Q96F07 1278 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 TMEM176AQ96HP8 235 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 FUBP3Q96I24 572 aaKnown RBP eCLIP4.46□□□□□ -1.7
VPS35-203ENST00000562420 CDC5LQ99459 802 aaKnown RBP4.46□□□□□ -1.7
VPS35-203ENST00000562420 GPR20Q99678 358 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 ADI1Q9BV57 179 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 MKS1Q9NXB0 559 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 KLHL33A6NCF5 533 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 GOLGA6L6A8MZA4 724 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 AKR1B10O60218 316 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 PEX11BO96011 259 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 OSMP13725 252 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 HIBADHP31937 336 aaKnown RBP4.45□□□□□ -1.7
VPS35-203ENST00000562420 GUCY1A2P33402 732 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 CASRP41180 1078 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 RABGGTBP53611 331 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 SLC16A1P53985 500 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 APBA1Q02410 837 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 ABCB5Q2M3G0 1257 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 BRDTQ58F21 947 aaPredicted RBP4.45□□□□□ -1.7
VPS35-203ENST00000562420 PGM2L1Q6PCE3 622 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 ZNF572Q7Z3I7 529 aaPredicted RBP4.45□□□□□ -1.7
VPS35-203ENST00000562420 SGMS1Q86VZ5 419 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 OR52N2Q8NGI0 321 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.45□□□□□ -1.7
VPS35-203ENST00000562420 JADE3Q92613 823 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 POLR3GLQ9BT43 218 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 FAM30AQ9NZY2 134 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 NCDNQ9UBB6 729 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 SAP30BPQ9UHR5 308 aaKnown RBP4.45□□□□□ -1.7
VPS35-203ENST00000562420 CCDC180Q9P1Z9 1646 aa4.45□□□□□ -1.7
VPS35-203ENST00000562420 KLRG2A4D1S0 409 aaPredicted RBP4.44□□□□□ -1.7
VPS35-203ENST00000562420 TEX33O43247 280 aa4.44□□□□□ -1.7
VPS35-203ENST00000562420 MT-CO1P00395 513 aa4.44□□□□□ -1.7
VPS35-203ENST00000562420 MYBL2P10244 700 aa4.44□□□□□ -1.7
VPS35-203ENST00000562420 MAN2A2P49641 1150 aa4.44□□□□□ -1.7
VPS35-203ENST00000562420 ADKP55263 362 aaKnown RBP4.44□□□□□ -1.7
VPS35-203ENST00000562420 FAM50AQ14320 339 aaKnown RBP4.44□□□□□ -1.7
VPS35-203ENST00000562420 FAM47AQ5JRC9 791 aa4.44□□□□□ -1.7
VPS35-203ENST00000562420 C1QL3Q5VWW1 255 aa4.44□□□□□ -1.7
VPS35-203ENST00000562420 RNF207Q6ZRF8 634 aa4.44□□□□□ -1.7
VPS35-203ENST00000562420 Q6ZVL8 140 aa4.44□□□□□ -1.7
VPS35-203ENST00000562420 TMPRSS6Q8IU80 811 aa4.44□□□□□ -1.7
VPS35-203ENST00000562420 TRMT2AQ8IZ69 625 aaKnown RBP4.44□□□□□ -1.7
VPS35-203ENST00000562420 CHMP4CQ96CF2 233 aa4.44□□□□□ -1.7
VPS35-203ENST00000562420 MANSC1Q9H8J5 431 aa4.44□□□□□ -1.7
VPS35-203ENST00000562420 TCF7L1Q9HCS4 588 aa4.44□□□□□ -1.7
VPS35-203ENST00000562420 LANCL2Q9NS86 450 aa4.44□□□□□ -1.7
VPS35-203ENST00000562420 DCAF1Q9Y4B6 1507 aa4.44□□□□□ -1.7
VPS35-203ENST00000562420 TNKSO95271 1327 aa4.44□□□□□ -1.7
VPS35-203ENST00000562420 ATRNL1Q5VV63 1379 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 SGTAO43765 313 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 PCDHGA12O60330 932 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 NDUFS2O75306 463 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 STC2O76061 302 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 IL2RBP14784 551 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 ALOX15P16050 662 aaPredicted RBP4.43□□□□□ -1.7
VPS35-203ENST00000562420 MGAT1P26572 445 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 SREBF1P36956 1147 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 RECQLP46063 649 aaPredicted RBP4.43□□□□□ -1.7
VPS35-203ENST00000562420 EVA1CP58658 441 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 PTH1RQ03431 593 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 MIIPQ5JXC2 388 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 SPDYAQ5MJ70 313 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 PRAMEF14Q5SWL7 426 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 PALM2Q8IXS6 379 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 GSPT2Q8IYD1 628 aaKnown RBP4.43□□□□□ -1.7
VPS35-203ENST00000562420 TEKT5Q96M29 485 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 LSM14BQ9BX40 385 aaKnown RBP4.43□□□□□ -1.7
VPS35-203ENST00000562420 CCDC8Q9H0W5 538 aaPredicted RBP4.43□□□□□ -1.7
VPS35-203ENST00000562420 DDX56Q9NY93 547 aaKnown RBP4.43□□□□□ -1.7
VPS35-203ENST00000562420 MOCS1Q9NZB8 636 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 TUBD1Q9UJT1 453 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 PCDHGA9Q9Y5G4 932 aaKnown RBP4.43□□□□□ -1.7
VPS35-203ENST00000562420 PCDHGA8Q9Y5G5 932 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 PCDHGA7Q9Y5G6 932 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 PCDHGA6Q9Y5G7 932 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 PCDHGA3Q9Y5H0 932 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 PCDHGA2Q9Y5H1 932 aa4.43□□□□□ -1.7
VPS35-203ENST00000562420 E2F8A0AVK6 867 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 DIRC3C9JPN6 131 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 TRIM24O15164 1050 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 MATN3O15232 486 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 ADCY6O43306 1168 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 PDGFRBP09619 1106 aa4.42□□□□□ -1.7
VPS35-203ENST00000562420 SNRPA1P09661 255 aaKnown RBP4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms