RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 CD320Q9NPF0 282 aa17.26■□□□□ 0.35
VPS39-203ENST00000561797 KMT5AQ9NQR1 393 aa17.26■□□□□ 0.35
VPS39-203ENST00000561797 PRG3Q9Y2Y8 225 aaPredicted RBP17.26■□□□□ 0.35
VPS39-203ENST00000561797 XIRP2A4UGR9 3374 aa17.26■□□□□ 0.35
VPS39-203ENST00000561797 PLXNA3P51805 1871 aa17.25■□□□□ 0.35
VPS39-203ENST00000561797 NPHP3-ACAD11A0A0J9YXS1 232 aa17.25■□□□□ 0.35
VPS39-203ENST00000561797 INPPL1O15357 1258 aa17.25■□□□□ 0.35
VPS39-203ENST00000561797 SSTR3P32745 418 aaPredicted RBP17.25■□□□□ 0.35
VPS39-203ENST00000561797 CEBPZQ03701 1054 aaKnown RBP17.25■□□□□ 0.35
VPS39-203ENST00000561797 DMP1Q13316 513 aaPredicted RBP17.25■□□□□ 0.35
VPS39-203ENST00000561797 SMAD4Q13485 552 aaKnown RBP17.25■□□□□ 0.35
VPS39-203ENST00000561797 NT5DC1Q5TFE4 455 aa17.25■□□□□ 0.35
VPS39-203ENST00000561797 COLGALT2Q8IYK4 626 aa17.25■□□□□ 0.35
VPS39-203ENST00000561797 TMEM87AQ8NBN3 555 aa17.25■□□□□ 0.35
VPS39-203ENST00000561797 RASSF8Q8NHQ8 419 aa17.25■□□□□ 0.35
VPS39-203ENST00000561797 SNX21Q969T3 373 aa17.25■□□□□ 0.35
VPS39-203ENST00000561797 RPS6KC1Q96S38 1066 aa17.25■□□□□ 0.35
VPS39-203ENST00000561797 VN1R3Q9BXE9 311 aa17.25■□□□□ 0.35
VPS39-203ENST00000561797 SNTG2Q9NY99 539 aa17.25■□□□□ 0.35
VPS39-203ENST00000561797 VCANP13611 3396 aa17.25■□□□□ 0.35
VPS39-203ENST00000561797 PDCD11Q14690 1871 aaKnown RBP17.24■□□□□ 0.35
VPS39-203ENST00000561797 MTCL1Q9Y4B5 1905 aaKnown RBP17.24■□□□□ 0.35
VPS39-203ENST00000561797 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.24■□□□□ 0.35
VPS39-203ENST00000561797 FSD2A1L4K1 749 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 SLC16A4O15374 487 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 STX6O43752 255 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 CTSAP10619 480 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 GUCY2CP25092 1073 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 MARCKSP29966 332 aaPredicted RBP17.24■□□□□ 0.35
VPS39-203ENST00000561797 LONP1P36776 959 aaKnown RBP17.24■□□□□ 0.35
VPS39-203ENST00000561797 SLC12A3P55017 1021 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 CACNB1Q02641 598 aaPredicted RBP17.24■□□□□ 0.35
VPS39-203ENST00000561797 DSC1Q08554 894 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 COASYQ13057 564 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 KARSQ15046 597 aaKnown RBP17.24■□□□□ 0.35
VPS39-203ENST00000561797 PTPAQ15257 358 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 SMAD2Q15796 467 aaKnown RBP17.24■□□□□ 0.35
VPS39-203ENST00000561797 ATF7IP2Q5U623 682 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 HSCBQ8IWL3 235 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 KCTD17Q8N5Z5 321 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 GSTCDQ8NEC7 633 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 TIPINQ9BVW5 301 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 APOL5Q9BWW9 433 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 MTMR6Q9Y217 621 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 GDAQ9Y2T3 454 aa17.24■□□□□ 0.35
VPS39-203ENST00000561797 PHLPP2Q6ZVD8 1323 aa17.23■□□□□ 0.35
VPS39-203ENST00000561797 SLC26A4O43511 780 aa17.23■□□□□ 0.35
VPS39-203ENST00000561797 CLASP2O75122 1294 aaKnown RBP17.23■□□□□ 0.35
VPS39-203ENST00000561797 SRGAP2BP0DMP2 458 aa17.23■□□□□ 0.35
VPS39-203ENST00000561797 KCNC3Q14003 757 aa17.23■□□□□ 0.35
VPS39-203ENST00000561797 SPECC1Q5M775 1068 aa17.23■□□□□ 0.35
VPS39-203ENST00000561797 GJD3Q8N144 294 aa17.23■□□□□ 0.35
VPS39-203ENST00000561797 LRRC15Q8TF66 581 aa17.23■□□□□ 0.35
VPS39-203ENST00000561797 RABGGTAQ92696 567 aa17.23■□□□□ 0.35
VPS39-203ENST00000561797 CXCL16Q9H2A7 254 aa17.23■□□□□ 0.35
VPS39-203ENST00000561797 TMEM134Q9H6X4 195 aa17.23■□□□□ 0.35
VPS39-203ENST00000561797 C17orf75Q9HAS0 396 aa17.23■□□□□ 0.35
VPS39-203ENST00000561797 MARCH5Q9NX47 278 aa17.23■□□□□ 0.35
VPS39-203ENST00000561797 F8W810 466 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 NR1I2O75469 434 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 RECQL4O94761 1208 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 PLCG1P19174 1290 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 GRIK3Q13003 919 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 MCM6Q14566 821 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 DCAF4L1Q3SXM0 396 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 ARSHQ5FYA8 562 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 ANKRD54Q6NXT1 300 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 TMEM184AQ6ZMB5 413 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 TAS1R3Q7RTX0 852 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 ZBTB33Q86T24 672 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 GPBP1Q86WP2 473 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 SMRP1Q8NCR6 262 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 KHSRPQ92945 711 aaKnown RBP eCLIP17.22■□□□□ 0.35
VPS39-203ENST00000561797 EPSTI1Q96J88 318 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 ACO2Q99798 780 aaKnown RBP17.22■□□□□ 0.35
VPS39-203ENST00000561797 COLEC11Q9BWP8 271 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 MRPL4Q9BYD3 311 aaKnown RBP17.22■□□□□ 0.35
VPS39-203ENST00000561797 BLOC1S4Q9NUP1 217 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 ARHGAP28Q9P2N2 729 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 CACNG4Q9UBN1 327 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 PRKAG3Q9UGI9 489 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 RBM19Q9Y4C8 960 aaKnown RBP17.22■□□□□ 0.35
VPS39-203ENST00000561797 USP15Q9Y4E8 981 aaPredicted RBP17.22■□□□□ 0.35
VPS39-203ENST00000561797 HCFC2Q9Y5Z7 792 aa17.22■□□□□ 0.35
VPS39-203ENST00000561797 SPTBN5Q9NRC6 3674 aaKnown RBP17.22■□□□□ 0.35
VPS39-203ENST00000561797 ZMYM2Q9UBW7 1377 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 C2CD2LO14523 706 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 HSP90AA1P07900 732 aaKnown RBP17.21■□□□□ 0.35
VPS39-203ENST00000561797 PLS3P13797 630 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 SMTNP53814 917 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 ZP2Q05996 745 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 GIT2Q14161 759 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 PTPN14Q15678 1187 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 FOXD4L5Q5VV16 416 aaPredicted RBP17.21■□□□□ 0.35
VPS39-203ENST00000561797 USP49Q70CQ1 688 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 TAS1R1Q7RTX1 841 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 APBB1IPQ7Z5R6 666 aaPredicted RBP17.21■□□□□ 0.35
VPS39-203ENST00000561797 ADHFE1Q8IWW8 467 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 FOXD4L4Q8WXT5 416 aaPredicted RBP17.21■□□□□ 0.35
VPS39-203ENST00000561797 RAD54LQ92698 747 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms