RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 ZFP42Q96MM3 310 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 MTMR9Q96QG7 549 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 TMEM175Q9BSA9 504 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 NXF3Q9H4D5 531 aaKnown RBP12.94□□□□□ -0.34
USP3-220ENST00000561381 GPRC5CQ9NQ84 441 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 ANKEF1Q9NU02 776 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 PPP4R2Q9NY27 417 aa12.94□□□□□ -0.34
USP3-220ENST00000561381 DBR1Q9UK59 544 aaKnown RBP12.94□□□□□ -0.34
USP3-220ENST00000561381 ARL5CA6NH57 179 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 USO1O60763 962 aaKnown RBP12.93□□□□□ -0.34
USP3-220ENST00000561381 DGAT1O75907 488 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 SPATA31C1P0DKV0 1188 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 MYBP10242 640 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 AVPR2P30518 371 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 AXLP30530 894 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 MCM7P33993 719 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 OR1G1P47890 313 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 SCNN1GP51170 649 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 CLCN4P51793 760 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 DSC1Q08554 894 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 TFDP1Q14186 410 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 MAEAQ7L5Y9 396 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 PPFIBP1Q86W92 1011 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 TDRD5Q8NAT2 981 aaKnown RBP12.93□□□□□ -0.34
USP3-220ENST00000561381 HS3ST6Q96QI5 342 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 EMILIN2Q9BXX0 1053 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 CSRNP2Q9H175 543 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 POLR3FQ9H1D9 316 aaPredicted RBP12.93□□□□□ -0.34
USP3-220ENST00000561381 LIMD1Q9UGP4 676 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 SORCS3Q9UPU3 1222 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 STK24Q9Y6E0 443 aa12.93□□□□□ -0.34
USP3-220ENST00000561381 INPPL1O15357 1258 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 SOD2P04179 222 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 AKAP5P24588 427 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 POU5F1BQ06416 359 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 MTMR3Q13615 1198 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 TRIM29Q14134 588 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 GPR149Q86SP6 731 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 CNNM3Q8NE01 707 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 GSTCDQ8NEC7 633 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 RABGGTAQ92696 567 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 CCDC51Q96ER9 411 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 CCDC43Q96MW1 224 aaKnown RBP12.92□□□□□ -0.34
USP3-220ENST00000561381 HERC2P3Q9BVR0 1158 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 KRTAP3-3Q9BYR6 98 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 KRTAP3-2Q9BYR7 98 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 SFXN1Q9H9B4 322 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 UBN1Q9NPG3 1134 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 MRPL17Q9NRX2 175 aaKnown RBP12.92□□□□□ -0.34
USP3-220ENST00000561381 CACNG4Q9UBN1 327 aa12.92□□□□□ -0.34
USP3-220ENST00000561381 C2orf16Q68DN1 1984 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 TEX28O15482 410 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 MED24O75448 989 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 NPTXRO95502 500 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 EFEMP2O95967 443 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 URODP06132 367 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 HOXB3P14651 431 aaPredicted RBP12.91□□□□□ -0.34
USP3-220ENST00000561381 PTPN5P54829 565 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 NCBP1Q09161 790 aaKnown RBP12.91□□□□□ -0.34
USP3-220ENST00000561381 PCBP1Q15365 356 aaKnown RBP eCLIP12.91□□□□□ -0.34
USP3-220ENST00000561381 CATSPER3Q86XQ3 398 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 RNF168Q8IYW5 571 aaPredicted RBP12.91□□□□□ -0.34
USP3-220ENST00000561381 ZDHHC14Q8IZN3 488 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 B3GALT6Q96L58 329 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 RPS6KC1Q96S38 1066 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 NFKBIZQ9BYH8 718 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 TRIM6Q9C030 488 aaPredicted RBP12.91□□□□□ -0.34
USP3-220ENST00000561381 FAM86C1Q9NVL1 165 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 KLK14Q9P0G3 267 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 GIT1Q9Y2X7 761 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 PLXNA3P51805 1871 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 DENND4AQ7Z401 1863 aa12.91□□□□□ -0.34
USP3-220ENST00000561381 TDRD15B5MCY1 1934 aaKnown RBP12.9□□□□□ -0.34
USP3-220ENST00000561381 LRRIQ4A6NIV6 560 aa12.9□□□□□ -0.34
USP3-220ENST00000561381 STK25O00506 426 aa12.9□□□□□ -0.34
USP3-220ENST00000561381 ZNF174Q15697 407 aa12.9□□□□□ -0.34
USP3-220ENST00000561381 KIAA0319Q5VV43 1072 aa12.9□□□□□ -0.34
USP3-220ENST00000561381 CCDC83Q8IWF9 413 aa12.9□□□□□ -0.34
USP3-220ENST00000561381 UBALD2Q8IYN6 164 aa12.9□□□□□ -0.34
USP3-220ENST00000561381 BSNDQ8WZ55 320 aa12.9□□□□□ -0.34
USP3-220ENST00000561381 GPR62Q9BZJ7 368 aa12.9□□□□□ -0.34
USP3-220ENST00000561381 MAN1C1Q9NR34 630 aa12.9□□□□□ -0.34
USP3-220ENST00000561381 STK39Q9UEW8 545 aa12.9□□□□□ -0.34
USP3-220ENST00000561381 USTQ9Y2C2 406 aa12.9□□□□□ -0.34
USP3-220ENST00000561381 USP20Q9Y2K6 914 aa12.9□□□□□ -0.34
USP3-220ENST00000561381 A0A1B0GUA9 196 aa12.89□□□□□ -0.35
USP3-220ENST00000561381 SPATA31D3P0C874 917 aa12.89□□□□□ -0.35
USP3-220ENST00000561381 XRCC6P12956 609 aaKnown RBP eCLIP12.89□□□□□ -0.35
USP3-220ENST00000561381 GLUD2P49448 558 aa12.89□□□□□ -0.35
USP3-220ENST00000561381 DSG1Q02413 1049 aa12.89□□□□□ -0.35
USP3-220ENST00000561381 SLC27A1Q6PCB7 646 aa12.89□□□□□ -0.35
USP3-220ENST00000561381 SPATA31D4Q6ZUB0 917 aa12.89□□□□□ -0.35
USP3-220ENST00000561381 CCDC149Q6ZUS6 474 aa12.89□□□□□ -0.35
USP3-220ENST00000561381 PRRX2Q99811 253 aa12.89□□□□□ -0.35
USP3-220ENST00000561381 PAAF1Q9BRP4 392 aa12.89□□□□□ -0.35
USP3-220ENST00000561381 CXCL16Q9H2A7 254 aa12.89□□□□□ -0.35
USP3-220ENST00000561381 TUFT1Q9NNX1 390 aa12.89□□□□□ -0.35
USP3-220ENST00000561381 PARP2Q9UGN5 583 aa12.89□□□□□ -0.35
USP3-220ENST00000561381 CACNA1HO95180 2353 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 CCDC195A0A1B0GUA6 201 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms