RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 GLI1P08151 1106 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 ZBTB48P10074 688 aaPredicted RBP5.07□□□□□ -1.6
SPG11-211ENST00000558561 LCP1P13796 627 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 AKR1B1P15121 316 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 MX1P20591 662 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 GTF2A2P52657 109 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 HMGCS2P54868 508 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 NUCB1Q02818 461 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 GABPAQ06546 454 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 PPIL2Q13356 520 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 SNX17Q15036 470 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 UBE3CQ15386 1083 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 NTRK3Q16288 839 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 C12orf60Q5U649 245 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 TATDN1Q6P1N9 297 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 C17orf99Q6UX52 265 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 CHD1LQ86WJ1 897 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 SCUBE1Q8IWY4 988 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 KBTBD3Q8NAB2 608 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 NUP43Q8NFH3 380 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 THAP3Q8WTV1 239 aaPredicted RBP5.07□□□□□ -1.6
SPG11-211ENST00000558561 LIN37Q96GY3 246 aaPredicted RBP5.07□□□□□ -1.6
SPG11-211ENST00000558561 RNPC3Q96LT9 517 aaKnown RBP5.07□□□□□ -1.6
SPG11-211ENST00000558561 MMP19Q99542 508 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 CHMP4BQ9H444 224 aaKnown RBP5.07□□□□□ -1.6
SPG11-211ENST00000558561 RWDD1Q9H446 243 aaPredicted RBP5.07□□□□□ -1.6
SPG11-211ENST00000558561 TXNRD2Q9NNW7 524 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 GULP1Q9UBP9 304 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 ACSL6Q9UKU0 697 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 GABRQQ9UN88 632 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 YBX2Q9Y2T7 364 aaKnown RBP5.07□□□□□ -1.6
SPG11-211ENST00000558561 SLC4A4Q9Y6R1 1079 aa5.07□□□□□ -1.6
SPG11-211ENST00000558561 ADGRA2Q96PE1 1338 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 TRBV23OR9-2A0A075B6M9 112 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 A0A0D9SFI3 127 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 A0A0G2JLL6 359 aaPredicted RBP5.06□□□□□ -1.6
SPG11-211ENST00000558561 A0A1W2PQ27 194 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 A0A1W2PQ64 194 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 A0A1W2PQC6 194 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 A0A1W2PQD8 194 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 CXCL11O14625 94 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 GPAA1O43292 621 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 CETPP11597 493 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 GSPT1P15170 499 aaKnown RBP5.06□□□□□ -1.6
SPG11-211ENST00000558561 TACR1P25103 407 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 LTBRP36941 435 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 INHBEP58166 350 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 CYP4F8P98187 520 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 SNAPC2Q13487 334 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 SQSTM1Q13501 440 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 TTF1Q15361 905 aaPredicted RBP5.06□□□□□ -1.6
SPG11-211ENST00000558561 LONRF2Q1L5Z9 754 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 CERKLQ49MI3 558 aaPredicted RBP5.06□□□□□ -1.6
SPG11-211ENST00000558561 C2orf27AQ580R0 203 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 FAM47AQ5JRC9 791 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 E4F1Q66K89 784 aaPredicted RBP5.06□□□□□ -1.6
SPG11-211ENST00000558561 MCTP1Q6DN14 999 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 IQCEQ6IPM2 695 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 KCNT2Q6UVM3 1135 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 USP53Q70EK8 1073 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 OTOP1Q7RTM1 612 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 PRRT2Q7Z6L0 340 aaPredicted RBP5.06□□□□□ -1.6
SPG11-211ENST00000558561 ZNF589Q86UQ0 364 aaPredicted RBP5.06□□□□□ -1.6
SPG11-211ENST00000558561 IFNL3Q8IZI9 196 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 RCBTB1Q8NDN9 531 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 SH3TC2Q8TF17 1288 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 DIO2Q92813 273 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 RILPL2Q969X0 211 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 NOL10Q9BSC4 688 aaKnown RBP5.06□□□□□ -1.6
SPG11-211ENST00000558561 DHRS4Q9BTZ2 278 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 KCNK12Q9HB15 430 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 SAGE1Q9NXZ1 904 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 FBLN5Q9UBX5 448 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 RWDD3Q9Y3V2 267 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 TRIM17Q9Y577 477 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 PTCH2Q9Y6C5 1203 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.06□□□□□ -1.6
SPG11-211ENST00000558561 DOCK1Q14185 1865 aa5.06□□□□□ -1.6
SPG11-211ENST00000558561 ZNFX1Q9P2E3 1918 aaKnown RBP5.05□□□□□ -1.6
SPG11-211ENST00000558561 TTC41PQ6P2S7 1318 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 NPHS1O60500 1241 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 NMT2O60551 498 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 TLR2O60603 784 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 MSCO60682 206 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 CNMDO75829 334 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 GLRX3O76003 335 aaKnown RBP5.05□□□□□ -1.6
SPG11-211ENST00000558561 PNLIPP16233 465 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 SDSP20132 328 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 SOX10P56693 466 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 BACE1P56817 501 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 SP3Q02447 781 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 SREBF2Q12772 1141 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 RAB3GAP1Q15042 981 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 ABCB5Q2M3G0 1257 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 ACBD5Q5T8D3 534 aaPredicted RBP5.05□□□□□ -1.6
SPG11-211ENST00000558561 GIMAP6Q6P9H5 292 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 RASGRP2Q7LDG7 609 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 CTU1Q7Z7A3 348 aaKnown RBP5.05□□□□□ -1.6
SPG11-211ENST00000558561 ANKRD23Q86SG2 305 aa5.05□□□□□ -1.6
SPG11-211ENST00000558561 JAZF1Q86VZ6 243 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms