RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SPOPO43791 374 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 ICAM1P05362 532 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 RPS6P62753 249 aaKnown RBP13.86□□□□□ -0.19
LDLR-207ENST00000558013 CCDC105Q8IYK2 499 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 KCTD17Q8N5Z5 321 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 ARFGAP2Q8N6H7 521 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 SYTL5Q8TDW5 730 aaPredicted RBP13.86□□□□□ -0.19
LDLR-207ENST00000558013 ATG4AQ8WYN0 398 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 SELENOSQ9BQE4 189 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 HERPUD2Q9BSE4 406 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 PABPC3Q9H361 631 aaKnown RBP13.86□□□□□ -0.19
LDLR-207ENST00000558013 DBR1Q9UK59 544 aaKnown RBP13.86□□□□□ -0.19
LDLR-207ENST00000558013 ATP8B3O60423 1300 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 ZNF646O15015 1829 aaPredicted RBP13.86□□□□□ -0.19
LDLR-207ENST00000558013 PHF2O75151 1096 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 RTN2O75298 545 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 EGFRP00533 1210 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 CNGA1P29973 690 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 TRIP13Q15645 432 aaPredicted RBP13.86□□□□□ -0.19
LDLR-207ENST00000558013 ICE2Q659A1 982 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 OGFOD1Q8N543 542 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 ZNF564Q8TBZ8 553 aaPredicted RBP13.86□□□□□ -0.19
LDLR-207ENST00000558013 ZNF653Q96CK0 615 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 PWWP2AQ96N64 755 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 ADAM7Q9H2U9 754 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 TMEM206Q9H813 350 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 EHMT1Q9H9B1 1298 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 FEM1BQ9UK73 627 aa13.86□□□□□ -0.19
LDLR-207ENST00000558013 TESPA1A2RU30 521 aaPredicted RBP13.85□□□□□ -0.19
LDLR-207ENST00000558013 O00370 1275 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 CYP11B1P15538 503 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 CHN1P15882 459 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 GTF2BQ00403 316 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 CETN1Q12798 172 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 SPDYE2Q495Y8 402 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 AGBL2Q5U5Z8 902 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 LARGE2Q8N3Y3 721 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 UBL4BQ8N7F7 174 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 NEK9Q8TD19 979 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 CD101Q93033 1021 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 TLCD1Q96CP7 247 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 SEC16BQ96JE7 1060 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 GMLQ99445 158 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 CTNND1O60716 968 aaKnown RBP13.85□□□□□ -0.19
LDLR-207ENST00000558013 SIX1Q15475 284 aaPredicted RBP13.85□□□□□ -0.19
LDLR-207ENST00000558013 SLC39A4Q6P5W5 647 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 ANO5Q75V66 913 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 CCDC13Q8IYE1 715 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 HELQQ8TDG4 1101 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 CNKSR1Q969H4 720 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 DDX23Q9BUQ8 820 aaKnown RBP13.85□□□□□ -0.19
LDLR-207ENST00000558013 COL4A5P29400 1685 aa13.85□□□□□ -0.19
LDLR-207ENST00000558013 CTNNA2P26232 953 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 NPTX2P47972 431 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 DENND2CQ68D51 928 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 C11orf63Q6NUN7 778 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 MMS22LQ6ZRQ5 1243 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 FAM160B2Q86V87 743 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 PARD3BQ8TEW8 1205 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 NAP1L3Q99457 506 aaPredicted RBP13.84□□□□□ -0.19
LDLR-207ENST00000558013 EFCC1Q9HA90 598 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 FZD1Q9UP38 647 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 UBIAD1Q9Y5Z9 338 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 DENND3A2RUS2 1198 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 CREB1P16220 341 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 MUTP22033 750 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 IFNAR2P48551 515 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 SCARA3Q6AZY7 606 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 OTUD6AQ7L8S5 288 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 CPLX4Q7Z7G2 160 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 SLC13A5Q86YT5 568 aaPredicted RBP13.84□□□□□ -0.19
LDLR-207ENST00000558013 TMEM161BQ8NDZ6 487 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 CABS1Q96KC9 395 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 JPH2Q9BR39 696 aaPredicted RBP13.84□□□□□ -0.19
LDLR-207ENST00000558013 CCDC113Q9H0I3 377 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 RIPK3Q9Y572 518 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 ADGRA3Q8IWK6 1321 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 PFASO15067 1338 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 SYNGAP1Q96PV0 1343 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 TP73O15350 636 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 GRIN3BO60391 1043 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 KRT5P13647 590 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 WNT7BP56706 349 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 PDE4CQ08493 712 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 TRAF1Q13077 416 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 DHX34Q14147 1143 aaKnown RBP13.84□□□□□ -0.19
LDLR-207ENST00000558013 CPA5Q8WXQ8 436 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 SHC3Q92529 594 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 TBX20Q9UMR3 447 aa13.84□□□□□ -0.19
LDLR-207ENST00000558013 DIS3Q9Y2L1 958 aaKnown RBP13.84□□□□□ -0.19
LDLR-207ENST00000558013 FAM187AA6NFU0 413 aa13.83□□□□□ -0.2
LDLR-207ENST00000558013 CFHP08603 1231 aa13.83□□□□□ -0.2
LDLR-207ENST00000558013 COILP38432 576 aaPredicted RBP13.83□□□□□ -0.2
LDLR-207ENST00000558013 VPS41P49754 854 aa13.83□□□□□ -0.2
LDLR-207ENST00000558013 SV2AQ7L0J3 742 aa13.83□□□□□ -0.2
LDLR-207ENST00000558013 PRUNE1Q86TP1 453 aa13.83□□□□□ -0.2
LDLR-207ENST00000558013 PRPF38AQ8NAV1 312 aaKnown RBP13.83□□□□□ -0.2
LDLR-207ENST00000558013 XPO6Q96QU8 1125 aaKnown RBP13.83□□□□□ -0.2
LDLR-207ENST00000558013 PLSCR1O15162 318 aa13.83□□□□□ -0.2
LDLR-207ENST00000558013 FSBPO95073 299 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms