RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	TDRD12	Q587J7	1177 aa	Known RBP	13.54	□□□□□ -0.24
SHMT2-233	ENST00000557529	HGSNAT	Q68CP4	663 aa		13.54	□□□□□ -0.24
SHMT2-233	ENST00000557529	IQCE	Q6IPM2	695 aa		13.54	□□□□□ -0.24
SHMT2-233	ENST00000557529	LMO3	Q8TAP4	145 aa		13.54	□□□□□ -0.24
SHMT2-233	ENST00000557529	FNBP1	Q96RU3	617 aa		13.54	□□□□□ -0.24
SHMT2-233	ENST00000557529	ACO2	Q99798	780 aa	Known RBP	13.54	□□□□□ -0.24
SHMT2-233	ENST00000557529	TCHP	Q9BT92	498 aa		13.54	□□□□□ -0.24
SHMT2-233	ENST00000557529	KATNAL1	Q9BW62	490 aa		13.54	□□□□□ -0.24
SHMT2-233	ENST00000557529	INO80B	Q9C086	356 aa	Predicted RBP	13.54	□□□□□ -0.24
SHMT2-233	ENST00000557529	HAUS4	Q9H6D7	363 aa		13.54	□□□□□ -0.24
SHMT2-233	ENST00000557529	COQ4	Q9Y3A0	265 aa		13.54	□□□□□ -0.24
SHMT2-233	ENST00000557529	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.54	□□□□□ -0.24
SHMT2-233	ENST00000557529	KIF5C	O60282	957 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	SMIM10L2A	P0DMW4	78 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	SMIM10L2B	P0DMW5	78 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	CYBA	P13498	195 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	FLT3LG	P49771	235 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	PSEN2	P49810	448 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	NLRP11	P59045	1033 aa	Known RBP	13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	CLDN10	P78369	228 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	SP3	Q02447	781 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	MBTD1	Q05BQ5	628 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	MCL1	Q07820	350 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	KLHL30	Q0D2K2	578 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	MFSD10	Q14728	455 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	SURF1	Q15526	300 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	KIAA0753	Q2KHM9	967 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	MARCH8	Q5T0T0	291 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	TSHZ1	Q6ZSZ6	1077 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	KIAA1328	Q86T90	577 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	ZNF410	Q86VK4	478 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	ZNF592	Q92610	1267 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	ZBTB45	Q96K62	511 aa	Predicted RBP	13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	ARHGAP39	Q9C0H5	1083 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	LUC7L	Q9NQ29	371 aa	Known RBP	13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	LZTFL1	Q9NQ48	299 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	RBAK	Q9NYW8	714 aa	Predicted RBP	13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	MYO1A	Q9UBC5	1043 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	DNAJC12	Q9UKB3	198 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	TNFSF13B	Q9Y275	285 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	REXO2	Q9Y3B8	237 aa	Known RBP	13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	MGAM	O43451	1857 aa		13.53	□□□□□ -0.24
SHMT2-233	ENST00000557529	HAS3	O00219	553 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	OGT	O15294	1046 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	EDN1	P05305	212 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	GJB1	P08034	283 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	PLEK	P08567	350 aa	Predicted RBP	13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	MYL3	P08590	195 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	DLAT	P10515	647 aa	Known RBP	13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	PROZ	P22891	400 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	SOX5	P35711	763 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	PRKCI	P41743	596 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	ACOT2	P49753	483 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	GPC3	P51654	580 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	AP3M2	P53677	418 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	GNG11	P61952	73 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	MAP2K1	Q02750	393 aa	Predicted RBP	13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	FSCN1	Q16658	493 aa	Known RBP	13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	TMEM132A	Q24JP5	1023 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	ASTE1	Q2TB18	679 aa	Predicted RBP	13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	ATF7IP2	Q5U623	682 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	NFRKB	Q6P4R8	1299 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	MPZL3	Q6UWV2	235 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	CRELD2	Q6UXH1	353 aa	Predicted RBP	13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	SYT10	Q6XYQ8	523 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	SRGAP1	Q7Z6B7	1085 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	VPS36	Q86VN1	386 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	FBXL13	Q8NEE6	735 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	TRIB2	Q92519	343 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	KAT2B	Q92831	832 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	LENG1	Q96BZ8	264 aa	Predicted RBP	13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	ZBTB10	Q96DT7	871 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	FAM81B	Q96LP2	452 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	TSGA10	Q9BZW7	698 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	HAPLN2	Q9GZV7	340 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	IFT122	Q9HBG6	1241 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	SPC25	Q9HBM1	224 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	SETD4	Q9NVD3	440 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529	GABRQ	Q9UN88	632 aa		13.52	□□□□□ -0.25
SHMT2-233	ENST00000557529		A0A087WZ62	844 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	SMIM35	A0A1B0GVV1	85 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	MBLAC1	A4D2B0	266 aa	Predicted RBP	13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529		F8VZ95	297 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	RBAK-RBAKDN	I3L0D1	243 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	KRT86	O43790	486 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	ZC3H11A	O75152	810 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	TBC1D8	O95759	1140 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	HOXD10	P28358	340 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	MAP2K2	P36507	400 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	ARHGAP25	P42331	645 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	VAV2	P52735	878 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	GJA9	P57773	515 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	ARID5A	Q03989	594 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	PRKCZ	Q05513	592 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	DRAP1	Q14919	205 aa	Predicted RBP	13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	GJB7	Q6PEY0	223 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	C15orf39	Q6ZRI6	1047 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	SV2A	Q7L0J3	742 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	IRF2BP2	Q7Z5L9	587 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	BRSK2	Q8IWQ3	736 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms