RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 ZPBP2Q6X784 338 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 DYMQ7RTS9 669 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 TAS1R3Q7RTX0 852 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 HAUS6Q7Z4H7 955 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 FAM178BQ8IXR5 827 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 LEO1Q8WVC0 666 aaPredicted RBP13.71□□□□□ -0.21
SLIRP-209ENST00000557342 POF1BQ8WVV4 589 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 MRPS27Q92552 414 aaKnown RBP13.71□□□□□ -0.21
SLIRP-209ENST00000557342 DDX12PQ92771 950 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 PPP2R3CQ969Q6 453 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 RPS6KC1Q96S38 1066 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 GAD1Q99259 594 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 TMEM175Q9BSA9 504 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 RNF39Q9H2S5 420 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 TNMDQ9H2S6 317 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 NRDE2Q9H7Z3 1164 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 MAGEF1Q9HAY2 307 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 SEL1LQ9UBV2 794 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 CHD7Q9P2D1 2997 aa13.71□□□□□ -0.22
SLIRP-209ENST00000557342 PDCD11Q14690 1871 aaKnown RBP13.7□□□□□ -0.22
SLIRP-209ENST00000557342 MYMKA6NI61 221 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 POMCP01189 267 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 ALDH2P05091 517 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 AKAP5P24588 427 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 MLH1P40692 756 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 BMS1Q14692 1282 aaKnown RBP13.7□□□□□ -0.22
SLIRP-209ENST00000557342 ZNF568Q3ZCX4 644 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 EEF1DP3Q658K8 133 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 ADALQ6DHV7 355 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 MPZL3Q6UWV2 235 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 SLC39A11Q8N1S5 342 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 DHX58Q96C10 678 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 TMEM169Q96HH4 297 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 TCHPQ9BT92 498 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 TARS2Q9BW92 718 aaKnown RBP13.7□□□□□ -0.22
SLIRP-209ENST00000557342 GBP3Q9H0R5 595 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 PTPRHQ9HD43 1115 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 TLR9Q9NR96 1032 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 SNTG2Q9NY99 539 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 STK39Q9UEW8 545 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 USP20Q9Y2K6 914 aa13.7□□□□□ -0.22
SLIRP-209ENST00000557342 POLR2DO15514 142 aaKnown RBP13.69□□□□□ -0.22
SLIRP-209ENST00000557342 NCK2O43639 380 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 NR1I2O75469 434 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 TOM1L1O75674 476 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 GALTP07902 379 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 MCF2P10911 925 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 PROZP22891 400 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 SCNN1GP51170 649 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 GTF2BQ00403 316 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 GRIK3Q13003 919 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 E2F4Q16254 413 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.69□□□□□ -0.22
SLIRP-209ENST00000557342 DNAJC19Q96DA6 116 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 BICD1Q96G01 975 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 ZFP42Q96MM3 310 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 CCDC94Q9BW85 323 aaPredicted RBP13.69□□□□□ -0.22
SLIRP-209ENST00000557342 CDT1Q9H211 546 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 ST6GALNAC4Q9H4F1 302 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 KBTBD4Q9NVX7 518 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 THEGQ9P2T0 379 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 TBX20Q9UMR3 447 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 COG5Q9UP83 839 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 FAN1Q9Y2M0 1017 aa13.69□□□□□ -0.22
SLIRP-209ENST00000557342 CLDN3O15551 220 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 RECQL4O94761 1208 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 DDHD2O94830 711 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 IDEP14735 1019 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 CMA1P23946 247 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 DNAJB1P25685 340 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 PBX3P40426 434 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 GRM5P41594 1212 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 MATR3P43243 847 aaKnown RBP eCLIP13.68□□□□□ -0.22
SLIRP-209ENST00000557342 LIG4P49917 911 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 AFF1P51825 1210 aaKnown RBP13.68□□□□□ -0.22
SLIRP-209ENST00000557342 YARSP54577 528 aaKnown RBP13.68□□□□□ -0.22
SLIRP-209ENST00000557342 CAMK1Q14012 370 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 TCEAL5Q5H9L2 206 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 SFR1Q86XK3 245 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 ZNF280BQ86YH2 543 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 CCDC65Q8IXS2 484 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 MICAL1Q8TDZ2 1067 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 HVCN1Q96D96 273 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 IGSF21Q96ID5 467 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 MRPL44Q9H9J2 332 aaKnown RBP13.68□□□□□ -0.22
SLIRP-209ENST00000557342 NGRNQ9NPE2 291 aaKnown RBP13.68□□□□□ -0.22
SLIRP-209ENST00000557342 TOPORSQ9NS56 1045 aaPredicted RBP13.68□□□□□ -0.22
SLIRP-209ENST00000557342 PANK4Q9NVE7 773 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 MIOSQ9NXC5 875 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 KLK14Q9P0G3 267 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 DNAJB4Q9UDY4 337 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 KCNH3Q9ULD8 1083 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 GDAQ9Y2T3 454 aa13.68□□□□□ -0.22
SLIRP-209ENST00000557342 TRANK1O15050 2925 aa13.67□□□□□ -0.22
SLIRP-209ENST00000557342 FSD2A1L4K1 749 aa13.67□□□□□ -0.22
SLIRP-209ENST00000557342 FRMD3A2A2Y4 597 aa13.67□□□□□ -0.22
SLIRP-209ENST00000557342 NT5C1B-RDH14C9J2C7 533 aa13.67□□□□□ -0.22
SLIRP-209ENST00000557342 HNRNPDLO14979 420 aaKnown RBP13.67□□□□□ -0.22
SLIRP-209ENST00000557342 PIGRP01833 764 aa13.67□□□□□ -0.22
SLIRP-209ENST00000557342 THP07101 528 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms