RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 PRPF3O43395 683 aaKnown RBP11.28□□□□□ -0.6
SCFD1-220ENST00000556486 N4BP1O75113 896 aaKnown RBP11.28□□□□□ -0.6
SCFD1-220ENST00000556486 GNA11P29992 359 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 EVCP57679 992 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 PUM1Q14671 1186 aaKnown RBP eCLIP11.28□□□□□ -0.6
SCFD1-220ENST00000556486 SWSAP1Q6NVH7 229 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 CCDC149Q6ZUS6 474 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 GLYCTKQ8IVS8 523 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 CKAP2LQ8IYA6 745 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 LRRC71Q8N4P6 559 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 LINC01465Q8N7H1 131 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 TPCN2Q8NHX9 752 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 SLC22A17Q8WUG5 538 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 TMEM169Q96HH4 297 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 RTP3Q9BQQ7 232 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 ZNF577Q9BSK1 485 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 C6orf50Q9HD87 102 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 DZANK1Q9NVP4 752 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 AKT3Q9Y243 479 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 PCDHA10Q9Y5I2 948 aa11.28□□□□□ -0.6
SCFD1-220ENST00000556486 CFAP47Q6ZTR5 3102 aa11.27□□□□□ -0.6
SCFD1-220ENST00000556486 MYH9P35579 1960 aaKnown RBP11.27□□□□□ -0.61
SCFD1-220ENST00000556486 MAGEB2O15479 319 aa11.27□□□□□ -0.61
SCFD1-220ENST00000556486 LRRN2O75325 713 aa11.27□□□□□ -0.61
SCFD1-220ENST00000556486 GBP2P32456 591 aaPredicted RBP11.27□□□□□ -0.61
SCFD1-220ENST00000556486 HSPA4P34932 840 aa11.27□□□□□ -0.61
SCFD1-220ENST00000556486 ALDH7A1P49419 539 aaKnown RBP11.27□□□□□ -0.61
SCFD1-220ENST00000556486 NLRP11P59045 1033 aaKnown RBP11.27□□□□□ -0.61
SCFD1-220ENST00000556486 NTRK3Q16288 839 aa11.27□□□□□ -0.61
SCFD1-220ENST00000556486 JAKMIP3Q5VZ66 844 aa11.27□□□□□ -0.61
SCFD1-220ENST00000556486 BICD2Q8TD16 824 aa11.27□□□□□ -0.61
SCFD1-220ENST00000556486 ZNF516Q92618 1163 aa11.27□□□□□ -0.61
SCFD1-220ENST00000556486 FAM167AQ96KS9 214 aa11.27□□□□□ -0.61
SCFD1-220ENST00000556486 SCLT1Q96NL6 688 aa11.27□□□□□ -0.61
SCFD1-220ENST00000556486 VN1R3Q9BXE9 311 aa11.27□□□□□ -0.61
SCFD1-220ENST00000556486 RNF26Q9BY78 433 aaPredicted RBP11.27□□□□□ -0.61
SCFD1-220ENST00000556486 TBC1D17Q9HA65 648 aa11.27□□□□□ -0.61
SCFD1-220ENST00000556486 RALYQ9UKM9 306 aaKnown RBP11.27□□□□□ -0.61
SCFD1-220ENST00000556486 INPP5FQ9Y2H2 1132 aa11.27□□□□□ -0.61
SCFD1-220ENST00000556486 SPTBN2O15020 2390 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 MEIS3P2A8K0S8 358 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 WDR64B1ANS9 1081 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 ADAMTS3O15072 1205 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 EPB41L2O43491 1005 aaKnown RBP11.26□□□□□ -0.61
SCFD1-220ENST00000556486 EDIL3O43854 480 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 B4GALT3O60512 393 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 PSAPP07602 524 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 SP9P0CG40 484 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 ZSCAN20P17040 1043 aaPredicted RBP11.26□□□□□ -0.61
SCFD1-220ENST00000556486 IFNAR1P17181 557 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 USP11P51784 963 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 OTOP3Q7RTS5 596 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 GPR149Q86SP6 731 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 FAM177A1Q8N128 213 aaPredicted RBP11.26□□□□□ -0.61
SCFD1-220ENST00000556486 CCDC148Q8NFR7 591 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 BRF1Q92994 677 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 RIT2Q99578 217 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 FOXQ1Q9C009 403 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 ADAMTS10Q9H324 1103 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 DNAJB4Q9UDY4 337 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 PCDHGA11Q9Y5H2 935 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 FANCMQ8IYD8 2048 aa11.26□□□□□ -0.61
SCFD1-220ENST00000556486 WDR81Q562E7 1941 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 OTOGLQ3ZCN5 2332 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 C2CD2LO14523 706 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 ZNF862O60290 1169 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 RPS6KB1P23443 525 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 EIF4BP23588 611 aaKnown RBP11.25□□□□□ -0.61
SCFD1-220ENST00000556486 VAMP1P23763 118 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 KLRC2P26717 231 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 MAPK1P28482 360 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 LETM2Q2VYF4 491 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 PRR16Q569H4 304 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 Q6ZUG5 572 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 ZNF598Q86UK7 904 aaKnown RBP11.25□□□□□ -0.61
SCFD1-220ENST00000556486 RDM1Q8NG50 284 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 GPR152Q8TDT2 470 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 RSPH1Q8WYR4 309 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 RUBCNQ92622 972 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 SFXN1Q9H9B4 322 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 SH3GLB2Q9NR46 395 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 DLL3Q9NYJ7 618 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 SNX14Q9Y5W7 946 aa11.25□□□□□ -0.61
SCFD1-220ENST00000556486 SPATA31D3P0C874 917 aa11.24□□□□□ -0.61
SCFD1-220ENST00000556486 CTSAP10619 480 aa11.24□□□□□ -0.61
SCFD1-220ENST00000556486 GLULP15104 373 aa11.24□□□□□ -0.61
SCFD1-220ENST00000556486 TMOD1P28289 359 aa11.24□□□□□ -0.61
SCFD1-220ENST00000556486 SFNP31947 248 aa11.24□□□□□ -0.61
SCFD1-220ENST00000556486 FGD1P98174 961 aa11.24□□□□□ -0.61
SCFD1-220ENST00000556486 BMS1Q14692 1282 aaKnown RBP11.24□□□□□ -0.61
SCFD1-220ENST00000556486 TARBP2Q15633 366 aaKnown RBP11.24□□□□□ -0.61
SCFD1-220ENST00000556486 PTPN14Q15678 1187 aa11.24□□□□□ -0.61
SCFD1-220ENST00000556486 EFCAB12Q6NXP0 572 aa11.24□□□□□ -0.61
SCFD1-220ENST00000556486 BLOC1S2Q6QNY1 142 aa11.24□□□□□ -0.61
SCFD1-220ENST00000556486 B3GNT9Q6UX72 402 aa11.24□□□□□ -0.61
SCFD1-220ENST00000556486 SPATA31D4Q6ZUB0 917 aa11.24□□□□□ -0.61
SCFD1-220ENST00000556486 SKAP1Q86WV1 359 aa11.24□□□□□ -0.61
SCFD1-220ENST00000556486 SLC5A5Q92911 643 aa11.24□□□□□ -0.61
SCFD1-220ENST00000556486 IGSF21Q96ID5 467 aa11.24□□□□□ -0.61
SCFD1-220ENST00000556486 JAKMIP1Q96N16 626 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms