RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 HLA-DRAP01903 254 aa16.02■□□□□ 0.15
CUX1-214ENST00000550008 PRKCBP05771 671 aa16.02■□□□□ 0.15
CUX1-214ENST00000550008 PSMC1P62191 440 aaKnown RBP16.02■□□□□ 0.15
CUX1-214ENST00000550008 FAM167AQ96KS9 214 aa16.02■□□□□ 0.15
CUX1-214ENST00000550008 MIS12Q9H081 205 aa16.02■□□□□ 0.15
CUX1-214ENST00000550008 KLHL14Q9P2G3 628 aa16.02■□□□□ 0.15
CUX1-214ENST00000550008 UBE4BO95155 1302 aa16.02■□□□□ 0.15
CUX1-214ENST00000550008 ATP11AP98196 1134 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 TMEM119Q4V9L6 283 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 OTOP1Q7RTM1 612 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 C4orf32Q8N8J7 132 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 SEPT1Q8WYJ6 367 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 DHX38Q92620 1227 aaKnown RBP16.01■□□□□ 0.15
CUX1-214ENST00000550008 FAM81BQ96LP2 452 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 FUT8Q9BYC5 575 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 TMEM117Q9H0C3 514 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 PPP1R9AQ9ULJ8 1098 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 EIF3DO15371 548 aaKnown RBP eCLIP16.01■□□□□ 0.15
CUX1-214ENST00000550008 BACE1P56817 501 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 LRRC14Q15048 493 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 DUOXA2Q1HG44 320 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 ANKRD20A3Q5VUR7 823 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 SCYL3Q8IZE3 742 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 RILPQ96NA2 401 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 SUCLA2Q9P2R7 463 aaPredicted RBP16.01■□□□□ 0.15
CUX1-214ENST00000550008 NPTX2P47972 431 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 MYO1EQ12965 1108 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 NCOA4Q13772 614 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 SPDYE2Q495Y8 402 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 HACE1Q8IYU2 909 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 SLC20A1Q8WUM9 679 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.01■□□□□ 0.15
CUX1-214ENST00000550008 SCINQ9Y6U3 715 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 LRRC10BA6NIK2 292 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 M0QYV0 167 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 MED7O43513 233 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 RTN2O75298 545 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 CSPG5O95196 566 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 PHBP35232 272 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 NPY5RQ15761 445 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 MUM1L1Q5H9M0 696 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 SRRM1Q8IYB3 904 aaKnown RBP16.01■□□□□ 0.15
CUX1-214ENST00000550008 HDAC7Q8WUI4 952 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 SLC38A10Q9HBR0 1119 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 TBX20Q9UMR3 447 aa16.01■□□□□ 0.15
CUX1-214ENST00000550008 VIRMAQ69YN4 1812 aaKnown RBP16.01■□□□□ 0.15
CUX1-214ENST00000550008 C19orf81C9J6K1 198 aa16■□□□□ 0.15
CUX1-214ENST00000550008 SGPL1O95470 568 aa16■□□□□ 0.15
CUX1-214ENST00000550008 PHKA2P46019 1235 aa16■□□□□ 0.15
CUX1-214ENST00000550008 IRX4P78413 519 aa16■□□□□ 0.15
CUX1-214ENST00000550008 SLMAPQ14BN4 828 aa16■□□□□ 0.15
CUX1-214ENST00000550008 GEN1Q17RS7 908 aa16■□□□□ 0.15
CUX1-214ENST00000550008 MOXD1Q6UVY6 613 aa16■□□□□ 0.15
CUX1-214ENST00000550008 IRF2BP1Q8IU81 584 aa16■□□□□ 0.15
CUX1-214ENST00000550008 BBOF1Q8ND07 529 aa16■□□□□ 0.15
CUX1-214ENST00000550008 FGFBP2Q9BYJ0 223 aa16■□□□□ 0.15
CUX1-214ENST00000550008 GINM1Q9NU53 330 aa16■□□□□ 0.15
CUX1-214ENST00000550008 INHBAP08476 426 aa16■□□□□ 0.15
CUX1-214ENST00000550008 LMNB2Q03252 620 aa16■□□□□ 0.15
CUX1-214ENST00000550008 FAM133BQ5BKY9 247 aaKnown RBP16■□□□□ 0.15
CUX1-214ENST00000550008 BEND6Q5SZJ8 279 aaPredicted RBP16■□□□□ 0.15
CUX1-214ENST00000550008 LGSNQ5TDP6 509 aa16■□□□□ 0.15
CUX1-214ENST00000550008 C15orf52Q6ZUT6 534 aaKnown RBP16■□□□□ 0.15
CUX1-214ENST00000550008 TAS1R2Q8TE23 839 aa16■□□□□ 0.15
CUX1-214ENST00000550008 ACSF2Q96CM8 615 aaPredicted RBP16■□□□□ 0.15
CUX1-214ENST00000550008 CCDC97Q96F63 343 aaPredicted RBP16■□□□□ 0.15
CUX1-214ENST00000550008 LRRC4Q9HBW1 653 aa16■□□□□ 0.15
CUX1-214ENST00000550008 PNMA3Q9UL41 463 aa16■□□□□ 0.15
CUX1-214ENST00000550008 ORC1Q13415 861 aa16■□□□□ 0.15
CUX1-214ENST00000550008 Q4G0T1 1027 aa16■□□□□ 0.15
CUX1-214ENST00000550008 FAM47EQ6ZV65 393 aa16■□□□□ 0.15
CUX1-214ENST00000550008 RCCD1A6NED2 376 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 PODXLO00592 558 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 TWF2Q6IBS0 349 aaKnown RBP15.99■□□□□ 0.15
CUX1-214ENST00000550008 FAM84AQ96KN4 292 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 ELAC2Q9BQ52 826 aaKnown RBP15.99■□□□□ 0.15
CUX1-214ENST00000550008 MKNK1Q9BUB5 465 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 TARSL2A2RTX5 802 aaKnown RBP15.99■□□□□ 0.15
CUX1-214ENST00000550008 GRID2IPA4D2P6 1211 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 LRRIQ3A6PVS8 624 aaPredicted RBP15.99■□□□□ 0.15
CUX1-214ENST00000550008 HMGB1P1B2RPK0 211 aaPredicted RBP15.99■□□□□ 0.15
CUX1-214ENST00000550008 RGL2O15211 777 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 GRAP2O75791 330 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 MYL3P08590 195 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 CA4P22748 312 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 GBP1P32455 592 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 PMS2P54278 862 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 NUGGCQ68CJ6 796 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 HPCAL4Q9UM19 191 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 RARRES1P49788 294 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 FIGNQ5HY92 759 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 RBBP8NLQ8NC74 664 aaPredicted RBP15.99■□□□□ 0.15
CUX1-214ENST00000550008 TPCN2Q8NHX9 752 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 DNAJC19Q96DA6 116 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 ACP6Q9NPH0 428 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 KCND2Q9NZV8 630 aa15.99■□□□□ 0.15
CUX1-214ENST00000550008 I3L4J1 428 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 ZSCAN20P17040 1043 aaPredicted RBP15.98■□□□□ 0.15
CUX1-214ENST00000550008 FAM102AQ5T9C2 384 aaPredicted RBP15.98■□□□□ 0.15
CUX1-214ENST00000550008 RSRC2Q7L4I2 434 aaKnown RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms