RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 FGFR4P22455 802 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 IL9RQ01113 521 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 EMC2Q15006 297 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 ATP2A3Q93084 1043 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 MMP19Q99542 508 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 ELAC2Q9BQ52 826 aaKnown RBP17.37■□□□□ 0.37
CUX1-213ENST00000549414 LRRC4Q9HBW1 653 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 FZD1Q9UP38 647 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 PHKA2P46019 1235 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 PLA2G4AP47712 749 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 AGBL3Q8NEM8 1001 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 FAM198AQ9UFP1 575 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 DIS3Q9Y2L1 958 aaKnown RBP17.37■□□□□ 0.37
CUX1-213ENST00000549414 ALG6Q9Y672 507 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 MMEP08473 750 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 RFX1P22670 979 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 RNASELQ05823 741 aaKnown RBP17.36■□□□□ 0.37
CUX1-213ENST00000549414 TTLL4Q14679 1199 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 DUOXA2Q1HG44 320 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 PYROXD1Q8WU10 500 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 POP1Q99575 1024 aaKnown RBP17.36■□□□□ 0.37
CUX1-213ENST00000549414 THAP2Q9H0W7 228 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 GAKO14976 1311 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 IQCA1LA6NCM1 817 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 XPOTO43592 962 aaKnown RBP17.36■□□□□ 0.37
CUX1-213ENST00000549414 TJP3O95049 919 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 CHRNA3P32297 505 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 MSH2P43246 934 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 KCNA1Q09470 495 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 SLITRK6Q9H5Y7 841 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 MED1Q15648 1581 aaPredicted RBP17.36■□□□□ 0.37
CUX1-213ENST00000549414 ATRNO75882 1429 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 F5H423 210 aaPredicted RBP17.36■□□□□ 0.37
CUX1-213ENST00000549414 M0QYV0 167 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 ARPP19P56211 112 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 MTM1Q13496 603 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 ARHGEF6Q15052 776 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 SMAD1Q15797 465 aaKnown RBP17.36■□□□□ 0.37
CUX1-213ENST00000549414 C6orf118Q5T5N4 469 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 FAM47EQ6ZV65 393 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 KCND2Q9NZV8 630 aa17.36■□□□□ 0.37
CUX1-213ENST00000549414 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.36■□□□□ 0.37
CUX1-213ENST00000549414 COMTP21964 271 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 PDE1BQ01064 536 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 ITKQ08881 620 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 LRRC14Q15048 493 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 PDIK1LQ8N165 341 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 MTMR8Q96EF0 704 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 CFAP57Q96MR6 1250 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 MKNK1Q9BUB5 465 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 FUT8Q9BYC5 575 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 HPCAL4Q9UM19 191 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 ZBED1O96006 694 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 PRKCBP05771 671 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 MMS22LQ6ZRQ5 1243 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 RSRC2Q7L4I2 434 aaKnown RBP17.35■□□□□ 0.37
CUX1-213ENST00000549414 PCK1P35558 622 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 IRX4P78413 519 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 ADCY2Q08462 1091 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 MOXD1Q6UVY6 613 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 TBC1D31Q96DN5 1066 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 CFAP36Q96G28 342 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 TMEM117Q9H0C3 514 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 WNT8AQ9H1J5 351 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 USP20Q9Y2K6 914 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 MYO1CO00159 1063 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 HLA-DRAP01903 254 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 TBXAS1P24557 533 aaPredicted RBP17.35■□□□□ 0.37
CUX1-213ENST00000549414 ZNF571Q7Z3V5 609 aaPredicted RBP17.35■□□□□ 0.37
CUX1-213ENST00000549414 GMCL1P1Q8NEA9 526 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 BTBD6Q96KE9 485 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 MTMR9Q96QG7 549 aa17.35■□□□□ 0.37
CUX1-213ENST00000549414 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.35■□□□□ 0.37
CUX1-213ENST00000549414 PFASO15067 1338 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 KLRC4O43908 158 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 NCOA4Q13772 614 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 FIGNQ5HY92 759 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 SYCP2LQ5T4T6 812 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 SDCCAG8Q86SQ7 713 aaPredicted RBP17.34■□□□□ 0.37
CUX1-213ENST00000549414 RSPH3Q86UC2 560 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 ZNF384Q8TF68 577 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 CIB2O75838 187 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 CPP00450 1065 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 ARL4AP40617 200 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 GPS1Q13098 491 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 MAP7D1Q3KQU3 841 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 BEND6Q5SZJ8 279 aaPredicted RBP17.34■□□□□ 0.37
CUX1-213ENST00000549414 RHOT1Q8IXI2 618 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 USP38Q8NB14 1042 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 PPFIBP2Q8ND30 876 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 HAS1Q92839 578 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 RBM41Q96IZ5 413 aaKnown RBP17.34■□□□□ 0.37
CUX1-213ENST00000549414 ATP6V1G3Q96LB4 118 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 SUCLA2Q9P2R7 463 aaPredicted RBP17.34■□□□□ 0.37
CUX1-213ENST00000549414 LPXNO60711 386 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 SLC12A2P55011 1212 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 PPP1R2P3Q6NXS1 205 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 ARHGEF18Q6ZSZ5 1173 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 SPATS2Q86XZ4 545 aaKnown RBP17.34■□□□□ 0.37
CUX1-213ENST00000549414 SEPT1Q8WYJ6 367 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms