RNA–Protein interactions for RNA: ENST00000545920.1

SNHG1-225, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 625 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-225	ENST00000545920	MYH1	P12882	1939 aa		6.99	□□□□□ -1.29
SNHG1-225	ENST00000545920	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	6.99	□□□□□ -1.29
SNHG1-225	ENST00000545920	VGLL3	A8MV65	326 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920		H3BM21	787 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	MYO1F	O00160	1098 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	TNFRSF10B	O14763	440 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	SIAH2	O43255	324 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	BCR	P11274	1271 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	EZR	P15311	586 aa	Known RBP	6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	MPST	P25325	297 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	MMP13	P45452	471 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	GUCY2F	P51841	1108 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	FKBP1A	P62942	108 aa	Known RBP	6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	HDLBP	Q00341	1268 aa	Known RBP	6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	GUCY1A3	Q02108	690 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	CAV1	Q03135	178 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	PPAT	Q06203	517 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	MRPL58	Q14197	206 aa	Known RBP	6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	DSC3	Q14574	896 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	KIF22	Q14807	665 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	LRRC41	Q15345	812 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	SNCB	Q16143	134 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	UAP1	Q16222	522 aa	Predicted RBP	6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	KRT71	Q3SY84	523 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	MFSD14B	Q5SR56	506 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	RNF187	Q5TA31	235 aa	Predicted RBP	6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	DENND2C	Q68D51	928 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	MFSD5	Q6N075	450 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	KCNV1	Q6PIU1	500 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	TRMT10C	Q7L0Y3	403 aa	Known RBP	6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	KCNK18	Q7Z418	384 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	CYP2U1	Q7Z449	544 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	DAAM2	Q86T65	1068 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	KLHL7	Q8IXQ5	586 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	C12orf56	Q8IXR9	622 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	CCDC13	Q8IYE1	715 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	SH2D3C	Q8N5H7	860 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	CNBD1	Q8NA66	436 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	ZNF784	Q8NCA9	323 aa	Predicted RBP	6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	SLC44A5	Q8NCS7	719 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	CCDC197	Q8NCU1	140 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	CFAP61	Q8NHU2	1237 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	KAT2B	Q92831	832 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	RPGR	Q92834	1020 aa	Known RBP	6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	SLCO2A1	Q92959	643 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	HPS3	Q969F9	1004 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	SLC35C1	Q96A29	364 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	COA7	Q96BR5	231 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	BORCS6	Q96GS4	357 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	GMCL1	Q96IK5	515 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	SEC16B	Q96JE7	1060 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	XPO6	Q96QU8	1125 aa	Known RBP	6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	TIPIN	Q9BVW5	301 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	AMN	Q9BXJ7	453 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	FOXP3	Q9BZS1	431 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	KANSL2	Q9H9L4	492 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	VAT1L	Q9HCJ6	419 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	CYLD	Q9NQC7	956 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	HOMER3	Q9NSC5	361 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	TMEM260	Q9NX78	707 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	MTUS1	Q9ULD2	1270 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	FRMD4B	Q9Y2L6	1034 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	TLL2	Q9Y6L7	1015 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	FRMPD4	Q14CM0	1322 aa		6.98	□□□□□ -1.29
SNHG1-225	ENST00000545920	COL4A1	P02462	1669 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	KLRG2	A4D1S0	409 aa	Predicted RBP	6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	SPDYE3	A6NKU9	549 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	PHF2	O75151	1096 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	TCEA3	O75764	348 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	UFL1	O94874	794 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	ALDH1A1	P00352	501 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	SSB	P05455	408 aa	Known RBP eCLIP	6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	P4HB	P07237	508 aa	Known RBP	6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	GZMA	P12544	262 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	FSHR	P23945	695 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	ZNF131	P52739	623 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	DR1	Q01658	176 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	SPIRE1	Q08AE8	756 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	IFT88	Q13099	833 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	MAPK7	Q13164	816 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	PLS1	Q14651	629 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	CYP1B1	Q16678	543 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	ANKRD20A8P	Q5CZ79	823 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	ARSH	Q5FYA8	562 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	KIAA1755	Q5JYT7	1200 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	KCTD16	Q68DU8	428 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	PPP1R2P3	Q6NXS1	205 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	TRIM46	Q7Z4K8	759 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	CPLX4	Q7Z7G2	160 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	TXNRD3	Q86VQ6	643 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	FAM186B	Q8IYM0	893 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	C12orf50	Q8NA57	414 aa	Predicted RBP	6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	GMCL1P1	Q8NEA9	526 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	UBLCP1	Q8WVY7	318 aa	Predicted RBP	6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	ATXN2L	Q8WWM7	1075 aa	Known RBP	6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	EEF2KMT	Q96G04	330 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	ACSBG1	Q96GR2	724 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	MYO19	Q96H55	970 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	IWS1	Q96ST2	819 aa		6.97	□□□□□ -1.29
SNHG1-225	ENST00000545920	PSMB7	Q99436	277 aa		6.97	□□□□□ -1.29

Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms