RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 ABLIM1O14639 778 aa17.47■□□□□ 0.39
PRPF40A-212ENST00000545856 CXCL10P02778 98 aa17.47■□□□□ 0.39
PRPF40A-212ENST00000545856 TPM2P07951 284 aa17.47■□□□□ 0.39
PRPF40A-212ENST00000545856 LUZP1Q86V48 1076 aa17.47■□□□□ 0.39
PRPF40A-212ENST00000545856 TCHPQ9BT92 498 aa17.47■□□□□ 0.39
PRPF40A-212ENST00000545856 PDZD7Q9H5P4 517 aa17.47■□□□□ 0.39
PRPF40A-212ENST00000545856 CDHR5Q9HBB8 845 aa17.47■□□□□ 0.39
PRPF40A-212ENST00000545856 ST3GAL5Q9UNP4 418 aa17.47■□□□□ 0.39
PRPF40A-212ENST00000545856 PIN4Q9Y237 131 aaKnown RBP17.47■□□□□ 0.39
PRPF40A-212ENST00000545856 ZNF233A6NK53 670 aa17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 ANKRD63C9JTQ0 380 aa17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 STX10O60499 249 aa17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 TPM3P06753 285 aa17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 ZSCAN20P17040 1043 aaPredicted RBP17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 HOXA11P31270 313 aaPredicted RBP17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 SARM1Q6SZW1 724 aa17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 CD302Q8IX05 232 aa17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 CBWD1Q9BRT8 395 aa17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 RBSNQ9H1K0 784 aa17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 C1orf112Q9NSG2 853 aa17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 FANCLQ9NW38 375 aa17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 ANKFY1Q9P2R3 1169 aa17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 ARMCX3Q9UH62 379 aaPredicted RBP17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 PADI3Q9ULW8 664 aa17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 ANK1P16157 1881 aa17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 PDCD11Q14690 1871 aaKnown RBP17.46■□□□□ 0.39
PRPF40A-212ENST00000545856 EFCAB14O75071 495 aa17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 ZNF623O75123 536 aa17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 TIMP1P01033 207 aa17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 EDN1P05305 212 aa17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 MATR3P43243 847 aaKnown RBP eCLIP17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 MRE11P49959 708 aa17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 SNRNP35Q16560 246 aaKnown RBP17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 TCP11X2Q5H9J9 407 aa17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 NT5DC4Q86YG4 428 aa17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 FAM186BQ8IYM0 893 aa17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 SEPT8Q92599 483 aa17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 ZNF668Q96K58 619 aaPredicted RBP17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 CNOT6LQ96LI5 555 aaKnown RBP17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 PPP1R16BQ96T49 567 aa17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 IFIH1Q9BYX4 1025 aaKnown RBP17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 CDT1Q9H211 546 aa17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 HSD3B7Q9H2F3 369 aa17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 PRKAG2Q9UGJ0 569 aa17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 LIMA1Q9UHB6 759 aaKnown RBP17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 MICAL3Q7RTP6 2002 aa17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 LTBP2Q14767 1821 aa17.45■□□□□ 0.38
PRPF40A-212ENST00000545856 KCNJ18B7U540 433 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 CLIC2O15247 247 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 B4GALT5O43286 388 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 FAM189A1O60320 539 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 CLTAP09496 248 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 GHRP10912 638 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 KRT13P13646 458 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 CDK11BP21127 795 aaKnown RBP17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 GRM5P41594 1212 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 CYP2J2P51589 502 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 AP3M2P53677 418 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 KCNJ12Q14500 433 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 CCDC40Q4G0X9 1142 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 PLEKHG4Q58EX7 1191 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 IRF2BP1Q8IU81 584 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 BRSK2Q8IWQ3 736 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 RNF214Q8ND24 703 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 TMC2Q8TDI7 906 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 CCDC94Q9BW85 323 aaPredicted RBP17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 TRIM6Q9C030 488 aaPredicted RBP17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 PLEKHA5Q9HAU0 1116 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 TOPORSQ9NS56 1045 aaPredicted RBP17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 SCN5AQ14524 2016 aa17.44■□□□□ 0.38
PRPF40A-212ENST00000545856 CBFA2T2O43439 604 aa17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 AKAP3O75969 853 aa17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 IL18RAPO95256 599 aa17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 NFX1Q12986 1120 aaKnown RBP17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 DSC3Q14574 896 aa17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 MBTPS1Q14703 1052 aa17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 MAN2A1Q16706 1144 aa17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 FILIP1LQ4L180 1135 aa17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 COL13A1Q5TAT6 717 aaPredicted RBP17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 CEP135Q66GS9 1140 aa17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 TWF2Q6IBS0 349 aaKnown RBP17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 TRIM59Q8IWR1 403 aa17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 RPUSD2Q8IZ73 545 aaKnown RBP17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 TMEM199Q8N511 208 aa17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 MFSD14AQ96MC6 490 aa17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 ASB7Q9H672 318 aa17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 AGO3Q9H9G7 860 aaKnown RBP17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 UBN1Q9NPG3 1134 aa17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 SAMSN1Q9NSI8 373 aaKnown RBP17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 CPSF3Q9UKF6 684 aaKnown RBP17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 TET1Q8NFU7 2136 aa17.43■□□□□ 0.38
PRPF40A-212ENST00000545856 PMM2O15305 246 aa17.42■□□□□ 0.38
PRPF40A-212ENST00000545856 N4BP1O75113 896 aaKnown RBP17.42■□□□□ 0.38
PRPF40A-212ENST00000545856 ADRB2P07550 413 aa17.42■□□□□ 0.38
PRPF40A-212ENST00000545856 RAG1P15918 1043 aa17.42■□□□□ 0.38
PRPF40A-212ENST00000545856 CD52P31358 61 aa17.42■□□□□ 0.38
PRPF40A-212ENST00000545856 GTF2H1P32780 548 aa17.42■□□□□ 0.38
PRPF40A-212ENST00000545856 BFSP1Q12934 665 aa17.42■□□□□ 0.38
PRPF40A-212ENST00000545856 SMYD5Q6GMV2 418 aa17.42■□□□□ 0.38
PRPF40A-212ENST00000545856 MFSD5Q6N075 450 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms