RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 FOXD4L1Q9NU39 408 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 STK17AQ9UEE5 414 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 PRKAG3Q9UGI9 489 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 CD207Q9UJ71 328 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 TNFSF13BQ9Y275 285 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 IRAK3Q9Y616 596 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 CLIC4Q9Y696 253 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 CSPG5O95196 566 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 KRT18P05783 430 aaKnown RBP12.98□□□□□ -0.33
HDAC4-216ENST00000544989 CTSAP10619 480 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 HOXB8P17481 243 aaPredicted RBP12.98□□□□□ -0.33
HDAC4-216ENST00000544989 DDIT3P35638 169 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 SLC11A1P49279 550 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 SCNN1GP51170 649 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 DSC1Q08554 894 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 COASYQ13057 564 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 MAPK7Q13164 816 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 SMAD4Q13485 552 aaKnown RBP12.98□□□□□ -0.33
HDAC4-216ENST00000544989 ATL3Q6DD88 541 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 TMEM184AQ6ZMB5 413 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 ADGRD2Q7Z7M1 963 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 PPFIBP1Q86W92 1011 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 GPBP1Q86WP2 473 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 ZNF280BQ86YH2 543 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 COLGALT2Q8IYK4 626 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 DAW1Q8N136 415 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 KRI1Q8N9T8 703 aaKnown RBP12.98□□□□□ -0.33
HDAC4-216ENST00000544989 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.98□□□□□ -0.33
HDAC4-216ENST00000544989 LARP4BQ92615 738 aaKnown RBP12.98□□□□□ -0.33
HDAC4-216ENST00000544989 RAD54LQ92698 747 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 KCNN1Q92952 543 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 PLIN2Q99541 437 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 POP1Q99575 1024 aaKnown RBP12.98□□□□□ -0.33
HDAC4-216ENST00000544989 COLEC11Q9BWP8 271 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 ZBP1Q9H171 429 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 RNF39Q9H2S5 420 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 TOPORSQ9NS56 1045 aaPredicted RBP12.98□□□□□ -0.33
HDAC4-216ENST00000544989 HES2Q9Y543 173 aa12.98□□□□□ -0.33
HDAC4-216ENST00000544989 PLXNA4Q9HCM2 1894 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 NT5C1B-RDH14C9J2C7 533 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 H3BQ06 376 aaPredicted RBP12.97□□□□□ -0.33
HDAC4-216ENST00000544989 NRP1O14786 923 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 TBCAO75347 108 aaKnown RBP12.97□□□□□ -0.33
HDAC4-216ENST00000544989 DDHD2O94830 711 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 FAM13AO94988 1023 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 CXCL14O95715 111 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 THP07101 528 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 PLCG1P19174 1290 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 AKAP5P24588 427 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 MARCKSP29966 332 aaPredicted RBP12.97□□□□□ -0.33
HDAC4-216ENST00000544989 LTBRP36941 435 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 OR1G1P47890 313 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 NASPP49321 788 aaPredicted RBP12.97□□□□□ -0.33
HDAC4-216ENST00000544989 YARSP54577 528 aaKnown RBP12.97□□□□□ -0.33
HDAC4-216ENST00000544989 KARSQ15046 597 aaKnown RBP12.97□□□□□ -0.33
HDAC4-216ENST00000544989 STK38Q15208 465 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 NT5DC1Q5TFE4 455 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 CCDC73Q6ZRK6 1079 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 RBM23Q86U06 439 aaKnown RBP12.97□□□□□ -0.33
HDAC4-216ENST00000544989 GPR65Q8IYL9 337 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 CASP10Q92851 521 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 ZFP42Q96MM3 310 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 ACO2Q99798 780 aaKnown RBP12.97□□□□□ -0.33
HDAC4-216ENST00000544989 LRFN3Q9BTN0 628 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 KIFC3Q9BVG8 833 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 CCDC94Q9BW85 323 aaPredicted RBP12.97□□□□□ -0.33
HDAC4-216ENST00000544989 EMILIN2Q9BXX0 1053 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 PARVGQ9HBI0 331 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 DNAJB4Q9UDY4 337 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 FBXO2Q9UK22 296 aaPredicted RBP12.97□□□□□ -0.33
HDAC4-216ENST00000544989 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.97□□□□□ -0.33
HDAC4-216ENST00000544989 USP34Q70CQ2 3546 aa12.97□□□□□ -0.33
HDAC4-216ENST00000544989 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.96□□□□□ -0.33
HDAC4-216ENST00000544989 C2orf71A6NGG8 1288 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 SLC16A4O15374 487 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 TOM1L1O75674 476 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 YEATS4O95619 227 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 MCF2P10911 925 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 CA8P35219 290 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 GTF2F1P35269 517 aaKnown RBP eCLIP12.96□□□□□ -0.336e-6■■■■□ 21.5
HDAC4-216ENST00000544989 ZNF131P52739 623 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 CREMQ03060 361 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 CEBPZQ03701 1054 aaKnown RBP12.96□□□□□ -0.33
HDAC4-216ENST00000544989 TUSC3Q13454 348 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 SMAD2Q15796 467 aaKnown RBP12.96□□□□□ -0.33
HDAC4-216ENST00000544989 KYAT1Q16773 422 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 ZNF568Q3ZCX4 644 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 TPRNQ4KMQ1 711 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 RRAGBQ5VZM2 374 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 ELMSAN1Q6PJG2 1045 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 MPZL3Q6UWV2 235 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 ZPBP2Q6X784 338 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 CDR2LQ86X02 465 aaPredicted RBP12.96□□□□□ -0.33
HDAC4-216ENST00000544989 SMRP1Q8NCR6 262 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 TMEM161BQ8NDZ6 487 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 MSLNLQ96KJ4 702 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 USP28Q96RU2 1077 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 TCHPQ9BT92 498 aa12.96□□□□□ -0.33
HDAC4-216ENST00000544989 MRPL17Q9NRX2 175 aaKnown RBP12.96□□□□□ -0.33
HDAC4-216ENST00000544989 BLOC1S4Q9NUP1 217 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms