RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 PPFIA4O75335 1185 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 ZMYND10O75800 440 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 ADRB2P07550 413 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 TM4SF4P48230 202 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 CASP8Q14790 479 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 SNRNP35Q16560 246 aaKnown RBP15.53■□□□□ 0.08
VPS33A-209ENST00000544349 SFMBT2Q5VUG0 894 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 HDXQ7Z353 690 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 CBWD2Q8IUF1 395 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 CAGE1Q8TC20 777 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 COG1Q8WTW3 980 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 TRAPPC12Q8WVT3 735 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 USP6NLQ92738 828 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 SMARCAL1Q9NZC9 954 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 EHD2Q9NZN4 543 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 LRRIQ3A6PVS8 624 aaPredicted RBP15.52■□□□□ 0.08
VPS33A-209ENST00000544349 NCK2O43639 380 aa15.52■□□□□ 0.08
VPS33A-209ENST00000544349 ADCY3O60266 1144 aa15.52■□□□□ 0.08
VPS33A-209ENST00000544349 PIGRP01833 764 aa15.52■□□□□ 0.08
VPS33A-209ENST00000544349 LIG4P49917 911 aa15.52■□□□□ 0.08
VPS33A-209ENST00000544349 TUBB4BP68371 445 aa15.52■□□□□ 0.08
VPS33A-209ENST00000544349 TDRD12Q587J7 1177 aaKnown RBP15.52■□□□□ 0.08
VPS33A-209ENST00000544349 C1orf220Q5T0J3 134 aa15.52■□□□□ 0.08
VPS33A-209ENST00000544349 NFRKBQ6P4R8 1299 aa15.52■□□□□ 0.08
VPS33A-209ENST00000544349 LRRC71Q8N4P6 559 aa15.52■□□□□ 0.08
VPS33A-209ENST00000544349 PLEKHO2Q8TD55 490 aa15.52■□□□□ 0.08
VPS33A-209ENST00000544349 C16orf70Q9BSU1 422 aa15.52■□□□□ 0.08
VPS33A-209ENST00000544349 SNX12Q9UMY4 172 aa15.52■□□□□ 0.08
VPS33A-209ENST00000544349 TMEM88BA6NKF7 163 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 MYBL2P10244 700 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 MYL7Q01449 175 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 CKAP4Q07065 602 aaKnown RBP15.52■□□□□ 0.07
VPS33A-209ENST00000544349 PPP3CAQ08209 521 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 CRHR2Q13324 411 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 IRF5Q13568 498 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 MXD4Q14582 209 aaPredicted RBP15.52■□□□□ 0.07
VPS33A-209ENST00000544349 ZNF484Q5JVG2 852 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 CREG2Q8IUH2 290 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 GPD1LQ8N335 351 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 TRIM58Q8NG06 486 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 OR6J1Q8NGC5 347 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 PSPC1Q8WXF1 523 aaKnown RBP15.52■□□□□ 0.07
VPS33A-209ENST00000544349 HHIPL1Q96JK4 782 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 ZIC5Q96T25 663 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 PSMB7Q99436 277 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 AIPL1Q9NZN9 384 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 FLRT1Q9NZU1 646 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 STYXL1Q9Y6J8 313 aa15.52■□□□□ 0.07
VPS33A-209ENST00000544349 P4HA2O15460 535 aa15.51■□□□□ 0.07
VPS33A-209ENST00000544349 ADCY6O43306 1168 aa15.51■□□□□ 0.07
VPS33A-209ENST00000544349 TACC1O75410 805 aa15.51■□□□□ 0.07
VPS33A-209ENST00000544349 INSRRP14616 1297 aa15.51■□□□□ 0.07
VPS33A-209ENST00000544349 LAMTOR4Q0VGL1 99 aa15.51■□□□□ 0.07
VPS33A-209ENST00000544349 MAPK8IP2Q13387 824 aaPredicted RBP15.51■□□□□ 0.07
VPS33A-209ENST00000544349 RAPGEF1Q13905 1077 aa15.51■□□□□ 0.07
VPS33A-209ENST00000544349 PRAMEF19Q5SWL8 479 aa15.51■□□□□ 0.07
VPS33A-209ENST00000544349 MFSD14AQ96MC6 490 aa15.51■□□□□ 0.07
VPS33A-209ENST00000544349 GJD2Q9UKL4 321 aa15.51■□□□□ 0.07
VPS33A-209ENST00000544349 USP20Q9Y2K6 914 aa15.51■□□□□ 0.07
VPS33A-209ENST00000544349 SSU72P8A0A1W2PR75 194 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 PJA2O43164 708 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 BUB1O43683 1085 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 MMP3P08254 477 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 ZNF286BP0CG31 522 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 HOXD8P13378 290 aaPredicted RBP15.5■□□□□ 0.07
VPS33A-209ENST00000544349 MAGEA1P43355 309 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 TNFAIP2Q03169 654 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 SLC9C1Q4G0N8 1177 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 EFCAB12Q6NXP0 572 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 SPAG5Q96R06 1193 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 SUCLA2Q9P2R7 463 aaPredicted RBP15.5■□□□□ 0.07
VPS33A-209ENST00000544349 EVPLQ92817 2033 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 KIAA0391O15091 583 aaKnown RBP15.5■□□□□ 0.07
VPS33A-209ENST00000544349 PMM2O15305 246 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 SERPING1P05155 500 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 EDN1P05305 212 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 CYP2B6P20813 491 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 CXCR5P32302 372 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 RGS2P41220 211 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 GCLMP48507 274 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 EFNA5P52803 228 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 CCL14Q16627 93 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 CDCA2Q69YH5 1023 aaPredicted RBP15.5■□□□□ 0.07
VPS33A-209ENST00000544349 SLFN12LQ6IEE8 588 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 RNF149Q8NC42 400 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 LMO3Q8TAP4 145 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 TMC2Q8TDI7 906 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 PARD3BQ8TEW8 1205 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 TARS2Q9BW92 718 aaKnown RBP15.5■□□□□ 0.07
VPS33A-209ENST00000544349 INTS2Q9H0H0 1204 aaKnown RBP15.5■□□□□ 0.07
VPS33A-209ENST00000544349 JRKLQ9Y4A0 524 aa15.5■□□□□ 0.07
VPS33A-209ENST00000544349 H3BRB1 525 aa15.49■□□□□ 0.07
VPS33A-209ENST00000544349 RBAK-RBAKDNI3L0D1 243 aa15.49■□□□□ 0.07
VPS33A-209ENST00000544349 CA12O43570 354 aa15.49■□□□□ 0.07
VPS33A-209ENST00000544349 C22orf31O95567 290 aa15.49■□□□□ 0.07
VPS33A-209ENST00000544349 ZNF865P0CJ78 1059 aaPredicted RBP15.49■□□□□ 0.07
VPS33A-209ENST00000544349 SRGAP2CP0DJJ0 459 aa15.49■□□□□ 0.07
VPS33A-209ENST00000544349 FAM193AP78312 1265 aa15.49■□□□□ 0.07
VPS33A-209ENST00000544349 MRPS25P82663 173 aaKnown RBP15.49■□□□□ 0.07
VPS33A-209ENST00000544349 CYP24A1Q07973 514 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms