RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 FAN1Q9Y2M0 1017 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 GSTTP1A0A1W2PQM5 241 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 PMM2O15305 246 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 FARP2O94887 1054 aaPredicted RBP17.62■□□□□ 0.41
COL4A1-204ENST00000543140 GLRA2P23416 452 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 ACOT2P49753 483 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 MSL3Q8N5Y2 521 aaKnown RBP17.62■□□□□ 0.41
COL4A1-204ENST00000543140 TMC2Q8TDI7 906 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 EPS8L1Q8TE68 723 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 IFT81Q8WYA0 676 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 ZBTB48P10074 688 aaPredicted RBP17.61■□□□□ 0.41
COL4A1-204ENST00000543140 CHRNB2P17787 502 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 STRN3Q13033 797 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 TRADDQ15628 312 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 LY6KQ17RY6 165 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 GLE1Q53GS7 698 aaKnown RBP17.61■□□□□ 0.41
COL4A1-204ENST00000543140 HELQQ8TDG4 1101 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 SLC7A3Q8WY07 619 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 RIN2Q8WYP3 895 aaPredicted RBP17.61■□□□□ 0.41
COL4A1-204ENST00000543140 ZBTB45Q96K62 511 aaPredicted RBP17.61■□□□□ 0.41
COL4A1-204ENST00000543140 NT5C1BQ96P26 610 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 PCYT2Q99447 389 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 ACBD3Q9H3P7 528 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 DHX33Q9H6R0 707 aaKnown RBP17.61■□□□□ 0.41
COL4A1-204ENST00000543140 VIPAS39Q9H9C1 493 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 TXNRD2Q9NNW7 524 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 NOC2LQ9Y3T9 749 aaKnown RBP17.61■□□□□ 0.41
COL4A1-204ENST00000543140 A0A0G2JLL6 359 aaPredicted RBP17.61■□□□□ 0.41
COL4A1-204ENST00000543140 ZNF233A6NK53 670 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 CALCAP01258 141 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 GARTP22102 1010 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 CARSP49589 748 aaKnown RBP17.61■□□□□ 0.41
COL4A1-204ENST00000543140 GPC3P51654 580 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 PPATQ06203 517 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 PRRT2Q7Z6L0 340 aaPredicted RBP17.61■□□□□ 0.41
COL4A1-204ENST00000543140 SHC3Q92529 594 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 HES6Q96HZ4 224 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 PORCNQ9H237 461 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 NOCTQ9UK39 431 aaKnown RBP17.61■□□□□ 0.41
COL4A1-204ENST00000543140 COQ4Q9Y3A0 265 aa17.61■□□□□ 0.41
COL4A1-204ENST00000543140 PGRMC1O00264 195 aaKnown RBP17.6■□□□□ 0.41
COL4A1-204ENST00000543140 CES2O00748 559 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 ATMINO43313 823 aaPredicted RBP17.6■□□□□ 0.41
COL4A1-204ENST00000543140 RAD51CO43502 376 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 MMEP08473 750 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 WNT7BP56706 349 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 DEPTORQ8TB45 409 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 ACTRT1Q8TDG2 376 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 ZNF516Q92618 1163 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 VTI1AQ96AJ9 217 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 CTTNBP2NLQ9P2B4 639 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 ADAM21Q9UKJ8 722 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 NFU1Q9UMS0 254 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 K7ERI5 159 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 GGPS1O95749 300 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 NLRP11P59045 1033 aaKnown RBP17.6■□□□□ 0.41
COL4A1-204ENST00000543140 TNNC1P63316 161 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 USP37Q86T82 979 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 ERO1BQ86YB8 467 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 IFT20Q8IY31 132 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.6■□□□□ 0.41
COL4A1-204ENST00000543140 HAPLN2Q9GZV7 340 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 SPON1Q9HCB6 807 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 ANKFY1Q9P2R3 1169 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 TMEM59LQ9UK28 342 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 PAPPA2Q9BXP8 1791 aa17.6■□□□□ 0.41
COL4A1-204ENST00000543140 ZC3H4Q9UPT8 1303 aaKnown RBP17.59■□□□□ 0.41
COL4A1-204ENST00000543140 A0A0G2JMZ2 1700 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 TMEM110-MUSTN1A8MSY1 372 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 CNMDO75829 334 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 ITGA4P13612 1032 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 TCF7P36402 384 aaPredicted RBP17.59■□□□□ 0.41
COL4A1-204ENST00000543140 GGCXP38435 758 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 STAT5BP51692 787 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 MCCD1P59942 119 aaPredicted RBP17.59■□□□□ 0.41
COL4A1-204ENST00000543140 DRP2Q13474 957 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 Q3C1V9 767 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 WDR78Q5VTH9 848 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 TARS2Q9BW92 718 aaKnown RBP17.59■□□□□ 0.41
COL4A1-204ENST00000543140 MAF1Q9H063 256 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 ISCUQ9H1K1 167 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 ZNFX1Q9P2E3 1918 aaKnown RBP17.59■□□□□ 0.41
COL4A1-204ENST00000543140 MCM3APO60318 1980 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 IGKV6D-21A0A0A0MT36 114 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 ERICH4A6NGS2 130 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 H0YCG3 227 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 KRIT1O00522 736 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 EXTL3O43909 919 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 KRT5P13647 590 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 TNNI1P19237 187 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 EDNRBP24530 442 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 MARK3P27448 753 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 ZBTB41Q5SVQ8 909 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 SCFD2Q8WU76 684 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 RUBCNQ92622 972 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 CDCA5Q96FF9 252 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 CEP89Q96ST8 783 aa17.59■□□□□ 0.41
COL4A1-204ENST00000543140 NIFKQ9BYG3 293 aaKnown RBP17.59■□□□□ 0.41
COL4A1-204ENST00000543140 DDX47Q9H0S4 455 aaKnown RBP17.59■□□□□ 0.41
COL4A1-204ENST00000543140 AGO2Q9UKV8 859 aaKnown RBP17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 212.5 ms