RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 KIAA1586Q9HCI6 787 aa13.32□□□□□ -0.28
DDX55-210ENST00000543016 TYW1Q9NV66 732 aaKnown RBP13.32□□□□□ -0.28
DDX55-210ENST00000543016 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.32□□□□□ -0.28
DDX55-210ENST00000543016 TTC3P53804 2025 aa13.32□□□□□ -0.28
DDX55-210ENST00000543016 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.31□□□□□ -0.28
DDX55-210ENST00000543016 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.31□□□□□ -0.28
DDX55-210ENST00000543016 CARNS1A5YM72 827 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 ABLIM1O14639 778 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 PSMA7O14818 248 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 CALUO43852 315 aaPredicted RBP13.31□□□□□ -0.28
DDX55-210ENST00000543016 NPTXRO95502 500 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 EDN1P05305 212 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 ITGA4P13612 1032 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 ATP2A2P16615 1042 aaKnown RBP13.31□□□□□ -0.28
DDX55-210ENST00000543016 GRM5P41594 1212 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 NFKBIBQ15653 356 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 NFIL3Q16649 462 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 C9orf50Q5SZB4 431 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 EEF1DP3Q658K8 133 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.31□□□□□ -0.28
DDX55-210ENST00000543016 ADSSL1Q8N142 457 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 TSPAN18Q96SJ8 248 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 CCDC94Q9BW85 323 aaPredicted RBP13.31□□□□□ -0.28
DDX55-210ENST00000543016 FGFBP2Q9BYJ0 223 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 CDT1Q9H211 546 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 TOPORSQ9NS56 1045 aaPredicted RBP13.31□□□□□ -0.28
DDX55-210ENST00000543016 DACH1Q9UI36 760 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 TRAF3IP3Q9Y228 551 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 GDAQ9Y2T3 454 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 GIT1Q9Y2X7 761 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 IPPQ9Y573 584 aa13.31□□□□□ -0.28
DDX55-210ENST00000543016 TTLL13PA6NNM8 815 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 OGTO15294 1046 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 INPPL1O15357 1258 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 TGFB1I1O43294 461 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 GJB5O95377 273 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 CLTAP09496 248 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 RPL13P26373 211 aaKnown RBP13.3□□□□□ -0.28
DDX55-210ENST00000543016 HOXD13P35453 343 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 MATR3P43243 847 aaKnown RBP eCLIP13.3□□□□□ -0.28
DDX55-210ENST00000543016 YARSP54577 528 aaKnown RBP13.3□□□□□ -0.28
DDX55-210ENST00000543016 KCNA1Q09470 495 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 EDRF1Q3B7T1 1238 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 SLC39A4Q6P5W5 647 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 SASS6Q6UVJ0 657 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 GLB1LQ6UWU2 654 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 SLC9A9Q8IVB4 645 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 HERC6Q8IVU3 1022 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 SMG8Q8ND04 991 aaKnown RBP13.3□□□□□ -0.28
DDX55-210ENST00000543016 GLIS3Q8NEA6 775 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 POMGNT1Q8WZA1 660 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 ERCC4Q92889 916 aaPredicted RBP13.3□□□□□ -0.28
DDX55-210ENST00000543016 ACAP3Q96P50 834 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 RAD9AQ99638 391 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 TSG101Q99816 390 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 MSTO1Q9BUK6 570 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 EIF2AQ9BY44 585 aaKnown RBP13.3□□□□□ -0.28
DDX55-210ENST00000543016 TMEM117Q9H0C3 514 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 KCTD10Q9H3F6 313 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 PLEKHA5Q9HAU0 1116 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 AGPAT3Q9NRZ7 376 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 CXXC1Q9P0U4 656 aaPredicted RBP13.3□□□□□ -0.28
DDX55-210ENST00000543016 KANSL3Q9P2N6 904 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 ANKFY1Q9P2R3 1169 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 AGO2Q9UKV8 859 aaKnown RBP13.3□□□□□ -0.28
DDX55-210ENST00000543016 INSL6Q9Y581 213 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 MICAL3Q7RTP6 2002 aa13.3□□□□□ -0.28
DDX55-210ENST00000543016 BICDL2A1A5D9 508 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 ANKRD63C9JTQ0 380 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 DGKIO75912 1065 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 PRCPP42785 496 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 NLRP12P59046 1061 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 DEFB103AP81534 67 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 HTRA4P83105 476 aaPredicted RBP13.29□□□□□ -0.28
DDX55-210ENST00000543016 LRRC63Q05C16 580 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 CENPPQ6IPU0 288 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 CAVIN1Q6NZI2 390 aaKnown RBP13.29□□□□□ -0.28
DDX55-210ENST00000543016 ARMCX5Q6P1M9 558 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 CD302Q8IX05 232 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 NELFCDQ8IXH7 590 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 ABI1Q8IZP0 508 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 ZBTB45Q96K62 511 aaPredicted RBP13.29□□□□□ -0.28
DDX55-210ENST00000543016 ZBED2Q9BTP6 218 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 MRPL9Q9BYD2 267 aaKnown RBP13.29□□□□□ -0.28
DDX55-210ENST00000543016 RSAD1Q9HA92 442 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 TMEM63CQ9P1W3 806 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 USP20Q9Y2K6 914 aa13.29□□□□□ -0.28
DDX55-210ENST00000543016 BIN1O00499 593 aa13.28□□□□□ -0.28
DDX55-210ENST00000543016 EXTL3O43909 919 aa13.28□□□□□ -0.28
DDX55-210ENST00000543016 ATF7P17544 494 aaPredicted RBP13.28□□□□□ -0.28
DDX55-210ENST00000543016 BMP6P22004 513 aa13.28□□□□□ -0.28
DDX55-210ENST00000543016 CCNE1P24864 410 aa13.28□□□□□ -0.28
DDX55-210ENST00000543016 ADSSP30520 456 aa13.28□□□□□ -0.28
DDX55-210ENST00000543016 SMAD3P84022 425 aaKnown RBP13.28□□□□□ -0.28
DDX55-210ENST00000543016 RAB30Q15771 203 aa13.28□□□□□ -0.28
DDX55-210ENST00000543016 LRIT3Q3SXY7 679 aa13.28□□□□□ -0.28
DDX55-210ENST00000543016 ZBTB33Q86T24 672 aa13.28□□□□□ -0.28
DDX55-210ENST00000543016 CDR2LQ86X02 465 aaPredicted RBP13.28□□□□□ -0.28
DDX55-210ENST00000543016 CMTR2Q8IYT2 770 aaKnown RBP13.28□□□□□ -0.28
DDX55-210ENST00000543016 GPD1LQ8N335 351 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms