RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 SH3GLB2Q9NR46 395 aa11.89□□□□□ -0.51
CDH3-203ENST00000542274 SPDYE2BA6NHP3 402 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 EDIL3O43854 480 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 BMP15O95972 392 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 EGFRP00533 1210 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 SPDYE6P0CI01 402 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 SNAP25P60880 206 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 DLGAP5Q15398 846 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 C1orf228Q6PIY5 440 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 DTHD1Q6ZMT9 781 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 PNMA8AQ86V59 439 aaPredicted RBP11.88□□□□□ -0.51
CDH3-203ENST00000542274 TRIML2Q8N7C3 387 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 SCAIQ8N9R8 606 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 CCDC148Q8NFR7 591 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 TRPC4APQ8TEL6 797 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 JDP2Q8WYK2 163 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 SCYL1Q96KG9 808 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 RNPC3Q96LT9 517 aaKnown RBP11.88□□□□□ -0.51
CDH3-203ENST00000542274 IDI2Q9BXS1 227 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 EPN3Q9H201 632 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 MOSPD1Q9UJG1 213 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 NOSIPQ9Y314 301 aaKnown RBP11.88□□□□□ -0.51
CDH3-203ENST00000542274 CD2APQ9Y5K6 639 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 ZNF536O15090 1300 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 AGPSO00116 658 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 IGF2BP3O00425 579 aaKnown RBP eCLIP11.88□□□□□ -0.51
CDH3-203ENST00000542274 ASAP2O43150 1006 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 MZF1P28698 734 aaPredicted RBP11.88□□□□□ -0.51
CDH3-203ENST00000542274 ALS2CLQ60I27 953 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 PPP2R2DQ66LE6 453 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 OR52E8Q6IFG1 317 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 FERD3LQ96RJ6 166 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 MRIQ9BWK5 157 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 ETNK2Q9NVF9 386 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 IMPACTQ9P2X3 320 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 FADS3Q9Y5Q0 445 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 SCINQ9Y6U3 715 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 IGKV6D-41A0A0C4DH26 115 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 TRIM49BA6NDI0 452 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 COL6A1P12109 1028 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 CCNFP41002 786 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 TECP42680 631 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 CENPAP49450 140 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 SKOR1P84550 965 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 GBE1Q04446 702 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 PTGISQ16647 500 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 RRAGBQ5VZM2 374 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 CIAPIN1Q6FI81 312 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 UNC5DQ6UXZ4 953 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 APTXQ7Z2E3 356 aaKnown RBP11.88□□□□□ -0.51
CDH3-203ENST00000542274 VCXQ9H320 206 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 PANK4Q9NVE7 773 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.88□□□□□ -0.51
CDH3-203ENST00000542274 ZNF70Q9UC06 446 aaPredicted RBP11.88□□□□□ -0.51
CDH3-203ENST00000542274 PCDHB2Q9Y5E7 798 aa11.88□□□□□ -0.51
CDH3-203ENST00000542274 USP17L10C9JJH3 530 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 AP3B1O00203 1094 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 ARHGAP33O14559 1287 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 MAP3K7O43318 606 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 TMCC2O75069 709 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 TDP2O95551 362 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 NOVP48745 357 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 JAG1P78504 1218 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 ANKDD1AQ495B1 522 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 TWF2Q6IBS0 349 aaKnown RBP11.87□□□□□ -0.51
CDH3-203ENST00000542274 IRGCQ6NXR0 463 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 ADGRF4Q8IZF3 695 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 AZIN2Q96A70 460 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 CEP63Q96MT8 703 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 SLF1Q9BQI6 1058 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 SEMA4AQ9H3S1 761 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 RIOX1Q9H6W3 641 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 HDAC9Q9UKV0 1011 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 SLC4A7Q9Y6M7 1214 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 SLC37A4O43826 429 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 LSP1P33241 339 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 SKIV2L2P42285 1042 aaKnown RBP11.87□□□□□ -0.51
CDH3-203ENST00000542274 ACADSBP45954 432 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 RRP1BQ14684 758 aaKnown RBP11.87□□□□□ -0.51
CDH3-203ENST00000542274 NLRP9Q7RTR0 991 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 DAGLBQ8NCG7 672 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 CPLX3Q8WVH0 158 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 SCG3Q8WXD2 468 aaKnown RBP11.87□□□□□ -0.51
CDH3-203ENST00000542274 LENG1Q96BZ8 264 aaPredicted RBP11.87□□□□□ -0.51
CDH3-203ENST00000542274 CSRNP1Q96S65 589 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 CCT8L2Q96SF2 557 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 NSRP1Q9H0G5 558 aaKnown RBP11.87□□□□□ -0.51
CDH3-203ENST00000542274 TUT1Q9H6E5 874 aaKnown RBP11.87□□□□□ -0.51
CDH3-203ENST00000542274 PSTPIP2Q9H939 334 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 JMJD4Q9H9V9 463 aa11.87□□□□□ -0.51
CDH3-203ENST00000542274 POLMQ9NP87 494 aaPredicted RBP11.87□□□□□ -0.51
CDH3-203ENST00000542274 MYO3BQ8WXR4 1341 aa11.86□□□□□ -0.51
CDH3-203ENST00000542274 SEC24DO94855 1032 aaPredicted RBP11.86□□□□□ -0.51
CDH3-203ENST00000542274 TTLL1O95922 423 aa11.86□□□□□ -0.51
CDH3-203ENST00000542274 ITGA2BP08514 1039 aa11.86□□□□□ -0.51
CDH3-203ENST00000542274 CCND1P24385 295 aa11.86□□□□□ -0.51
CDH3-203ENST00000542274 PCK1P35558 622 aa11.86□□□□□ -0.51
CDH3-203ENST00000542274 LONP1P36776 959 aaKnown RBP11.86□□□□□ -0.51
CDH3-203ENST00000542274 ADCY8P40145 1251 aa11.86□□□□□ -0.51
CDH3-203ENST00000542274 PMS1P54277 932 aaKnown RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms