RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 RBM19Q9Y4C8 960 aaKnown RBP15.64■□□□□ 0.09
USP28-209ENST00000540925 IRAK3Q9Y616 596 aa15.64■□□□□ 0.09
USP28-209ENST00000540925 NPHP3-ACAD11A0A0J9YXS1 232 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 GRXCR2A6NFK2 248 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 CCDC169A6NNP5 214 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 SFI1A8K8P3 1242 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 H3BQ06 376 aaPredicted RBP15.63■□□□□ 0.09
USP28-209ENST00000540925 K7ERI5 159 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 NRP1O14786 923 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 PDIA4P13667 645 aaKnown RBP15.63■□□□□ 0.09
USP28-209ENST00000540925 PROZP22891 400 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 SCNN1GP51170 649 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 RNASELQ05823 741 aaKnown RBP15.63■□□□□ 0.09
USP28-209ENST00000540925 RAD51AP2Q09MP3 1159 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 ATF7IP2Q5U623 682 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 TMEM184AQ6ZMB5 413 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 HACE1Q8IYU2 909 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 RNF168Q8IYW5 571 aaPredicted RBP15.63■□□□□ 0.09
USP28-209ENST00000540925 MRPL43Q8N983 215 aaKnown RBP15.63■□□□□ 0.09
USP28-209ENST00000540925 LINC00301Q8NCQ3 95 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 PPP2R3CQ969Q6 453 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 TMEM169Q96HH4 297 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 UHRF1Q96T88 793 aaPredicted RBP15.63■□□□□ 0.09
USP28-209ENST00000540925 CDCA3Q99618 268 aaPredicted RBP15.63■□□□□ 0.09
USP28-209ENST00000540925 ACO2Q99798 780 aaKnown RBP15.63■□□□□ 0.09
USP28-209ENST00000540925 TCF25Q9BQ70 676 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 REEP2Q9BRK0 252 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 KMT5AQ9NQR1 393 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 MARCH5Q9NX47 278 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 ODF2LQ9ULJ1 636 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 TNFSF13BQ9Y275 285 aa15.63■□□□□ 0.09
USP28-209ENST00000540925 C2orf71A6NGG8 1288 aa15.62■□□□□ 0.09
USP28-209ENST00000540925 PTGESO14684 152 aa15.62■□□□□ 0.09
USP28-209ENST00000540925 BRD1O95696 1058 aa15.62■□□□□ 0.09
USP28-209ENST00000540925 SSBP05455 408 aaKnown RBP eCLIP15.62■□□□□ 0.09
USP28-209ENST00000540925 MAPTP10636 758 aaKnown RBP15.62■□□□□ 0.09
USP28-209ENST00000540925 MCM6Q14566 821 aa15.62■□□□□ 0.09
USP28-209ENST00000540925 NAB2Q15742 525 aa15.62■□□□□ 0.09
USP28-209ENST00000540925 PUS10Q3MIT2 529 aaKnown RBP15.62■□□□□ 0.09
USP28-209ENST00000540925 SPECC1Q5M775 1068 aa15.62■□□□□ 0.09
USP28-209ENST00000540925 PLPP4Q5VZY2 271 aa15.62■□□□□ 0.09
USP28-209ENST00000540925 NECAB3Q96P71 396 aaPredicted RBP15.62■□□□□ 0.09
USP28-209ENST00000540925 FIZ1Q96SL8 496 aa15.62■□□□□ 0.09
USP28-209ENST00000540925 APOL6Q9BWW8 343 aa15.62■□□□□ 0.09
USP28-209ENST00000540925 GBP3Q9H0R5 595 aa15.62■□□□□ 0.09
USP28-209ENST00000540925 CXCL16Q9H2A7 254 aa15.62■□□□□ 0.09
USP28-209ENST00000540925 IGFLR1Q9H665 355 aa15.62■□□□□ 0.09
USP28-209ENST00000540925 TLE6Q9H808 572 aa15.62■□□□□ 0.09
USP28-209ENST00000540925 TDRD15B5MCY1 1934 aaKnown RBP15.62■□□□□ 0.09
USP28-209ENST00000540925 FSD2A1L4K1 749 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 PER2O15055 1255 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 SLC16A4O15374 487 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 LILRB3O75022 631 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 RECQL4O94761 1208 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 ALDH2P05091 517 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 ZSCAN22P10073 491 aaPredicted RBP15.61■□□□□ 0.09
USP28-209ENST00000540925 CTSAP10619 480 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 DDIT3P35638 169 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 NCKAP1LP55160 1127 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 RBM10P98175 930 aaKnown RBP15.61■□□□□ 0.09
USP28-209ENST00000540925 CEBPZQ03701 1054 aaKnown RBP15.61■□□□□ 0.09
USP28-209ENST00000540925 GRIK3Q13003 919 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 COASYQ13057 564 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 PKP1Q13835 747 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 GIT2Q14161 759 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 SMC1AQ14683 1233 aaKnown RBP15.61■□□□□ 0.09
USP28-209ENST00000540925 DCAF4L1Q3SXM0 396 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 PTCRAQ6ISU1 281 aaPredicted RBP15.61■□□□□ 0.09
USP28-209ENST00000540925 RBM23Q86U06 439 aaKnown RBP15.61■□□□□ 0.09
USP28-209ENST00000540925 GPBP1Q86WP2 473 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 VPS52Q8N1B4 723 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 KRI1Q8N9T8 703 aaKnown RBP15.61■□□□□ 0.09
USP28-209ENST00000540925 MICAL1Q8TDZ2 1067 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 LARP4BQ92615 738 aaKnown RBP15.61■□□□□ 0.09
USP28-209ENST00000540925 MRPL4Q9BYD3 311 aaKnown RBP15.61■□□□□ 0.09
USP28-209ENST00000540925 ENTPD7Q9NQZ7 604 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 SNTG2Q9NY99 539 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 KLK14Q9P0G3 267 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 KCNG1Q9UIX4 513 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 MYH11P35749 1972 aa15.61■□□□□ 0.09
USP28-209ENST00000540925 A0A087X0B3 334 aa15.6■□□□□ 0.09
USP28-209ENST00000540925 F8W810 466 aa15.6■□□□□ 0.09
USP28-209ENST00000540925 F13A1P00488 732 aa15.6■□□□□ 0.09
USP28-209ENST00000540925 IL9P15248 144 aa15.6■□□□□ 0.09
USP28-209ENST00000540925 LIG1P18858 919 aa15.6■□□□□ 0.09
USP28-209ENST00000540925 CACNB1Q02641 598 aaPredicted RBP15.6■□□□□ 0.09
USP28-209ENST00000540925 XKR4Q5GH76 650 aa15.6■□□□□ 0.09
USP28-209ENST00000540925 TMC7Q7Z402 723 aa15.6■□□□□ 0.09
USP28-209ENST00000540925 FAM178BQ8IXR5 827 aa15.6■□□□□ 0.09
USP28-209ENST00000540925 SMRP1Q8NCR6 262 aa15.6■□□□□ 0.09
USP28-209ENST00000540925 FAM193BQ96PV7 902 aaPredicted RBP15.6■□□□□ 0.09
USP28-209ENST00000540925 ADPGKQ9BRR6 497 aa15.6■□□□□ 0.09
USP28-209ENST00000540925 TARS2Q9BW92 718 aaKnown RBP15.6■□□□□ 0.09
USP28-209ENST00000540925 CDT1Q9H211 546 aa15.6■□□□□ 0.09
USP28-209ENST00000540925 LARSQ9P2J5 1176 aaKnown RBP15.6■□□□□ 0.09
USP28-209ENST00000540925 STK17AQ9UEE5 414 aa15.6■□□□□ 0.09
USP28-209ENST00000540925 STK39Q9UEW8 545 aa15.6■□□□□ 0.09
USP28-209ENST00000540925 PARP2Q9UGN5 583 aa15.6■□□□□ 0.09
USP28-209ENST00000540925 FAN1Q9Y2M0 1017 aa15.6■□□□□ 0.09
USP28-209ENST00000540925 MEFVO15553 781 aaPredicted RBP15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms