RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	TMEM79	Q9BSE2	394 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	TEX13A	Q9BXU3	409 aa	Predicted RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	MRPL47	Q9HD33	250 aa	Known RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	ABCC4	O15439	1325 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	POLG	P54098	1239 aa	Predicted RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	GSTA3	Q16772	222 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	C15orf59	Q2T9L4	293 aa	Predicted RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	SYCP2L	Q5T4T6	812 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	LVRN	Q6Q4G3	990 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	TC2N	Q8N9U0	490 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	DRAXIN	Q8NBI3	349 aa	Predicted RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	FAF2	Q96CS3	445 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	TIMMDC1	Q9NPL8	285 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	TTC7A	Q9ULT0	858 aa	Predicted RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	PRR23A	A6NEV1	266 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	CENPX	A8MT69	81 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	NOTO	A8MTQ0	251 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	GNPAT	O15228	680 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	TJP3	O95049	919 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	VAV1	P15498	845 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	CHN2	P52757	468 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	OLR1	P78380	273 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	RBM44	Q6ZP01	1051 aa	Known RBP	9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	MIGA2	Q7L4E1	593 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	DNAAF3	Q8N9W5	541 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	JPH4	Q96JJ6	628 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	MANSC1	Q9H8J5	431 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	ARHGEF38	Q9NXL2	777 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	SMARCAL1	Q9NZC9	954 aa		9.25	□□□□□ -0.93
YBX3-208	ENST00000540447	ALOX12	P18054	663 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	RAB27A	P51159	221 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	KCNMA1	Q12791	1236 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	BFSP2	Q13515	415 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	ACCSL	Q4AC99	568 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	KLHL17	Q6TDP4	642 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	COPS6	Q7L5N1	327 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	BNIPL	Q7Z465	357 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	AKAP14	Q86UN6	197 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	COX4I2	Q96KJ9	171 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	LIMA1	Q9UHB6	759 aa	Known RBP	9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	PRDM2	Q13029	1718 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	SMCO2	A6NFE2	343 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	PRDM1	O75626	825 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	MED26	O95402	600 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	IFNA8	P32881	189 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	ABL2	P42684	1182 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	GSC	P56915	257 aa	Predicted RBP	9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	PICALM	Q13492	652 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	ACAP1	Q15027	740 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	EFHC1	Q5JVL4	640 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	PERM1	Q5SV97	790 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	IZUMO3	Q5VZ72	239 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	WAPL	Q7Z5K2	1190 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	RBM12B	Q8IXT5	1001 aa	Known RBP	9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	CDHR1	Q96JP9	859 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	PLEKHG4B	Q96PX9	1271 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	ARMT1	Q9H993	441 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	C12orf4	Q9NQ89	552 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	RAB21	Q9UL25	225 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	MYRF	Q9Y2G1	1151 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	NDUFB9	Q9Y6M9	179 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	PFDN6	O15212	129 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	PHGDH	O43175	533 aa	Known RBP	9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	PTDSS1	P48651	473 aa	Known RBP	9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	LAMC2	Q13753	1193 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	LRRC41	Q15345	812 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	LRRN4CL	Q8ND94	238 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	CHP1	Q99653	195 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	CCDC59	Q9P031	241 aa	Known RBP	9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	INPP5F	Q9Y2H2	1132 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	MAP2K7	O14733	419 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	FOXP2	O15409	715 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	ALOX5	P09917	674 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	IST1	P53990	364 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	TIMM10	P62072	90 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	LRRC63	Q05C16	580 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	ITGA7	Q13683	1181 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	RNF220	Q5VTB9	566 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	BARGIN	Q6ZT62	677 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	KRT27	Q7Z3Y8	459 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	TRIM69	Q86WT6	500 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	GALNT15	Q8N3T1	639 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	GJA10	Q969M2	543 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	EHD4	Q9H223	541 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	SPATA7	Q9P0W8	599 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	STAP2	Q9UGK3	403 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	SMNDC1	O75940	238 aa	Known RBP eCLIP	9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	MXI1	P50539	228 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	DGUOK	Q16854	277 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	EAPP	Q56P03	285 aa	Predicted RBP	9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	CCNYL1	Q8N7R7	359 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	AGR3	Q8TD06	166 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	APOL4	Q9BPW4	351 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	CDV3	Q9UKY7	258 aa	Known RBP	9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	TMED5	Q9Y3A6	229 aa		9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	THOC2	Q8NI27	1593 aa	Known RBP	9.24	□□□□□ -0.93
YBX3-208	ENST00000540447	DPPA5	A6NC42	116 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	EVPLL	A8MZ36	301 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	TSPAN4	O14817	238 aa		9.23	□□□□□ -0.93

Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms