RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 SSRP1Q08945 709 aaKnown RBP10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 SH3D19Q5HYK7 790 aa10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 CFAP157Q5JU67 520 aa10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 INTS8Q75QN2 995 aaKnown RBP10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 KBTBD2Q8IY47 623 aa10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 PDCD7Q8N8D1 485 aaKnown RBP10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 ERMNQ8TAM6 284 aa10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 IRGQQ8WZA9 623 aa10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 TAF4BQ92750 862 aa10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 SLC7A6OSQ96CW6 309 aaPredicted RBP10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 KIAA1683Q9H0B3 1180 aa10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 CABP5Q9NP86 173 aa10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 GPCPD1Q9NPB8 672 aa10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 FAM217BQ9NTX9 383 aaPredicted RBP10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 RNF181Q9P0P0 153 aa10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 RPL26L1Q9UNX3 145 aaKnown RBP10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 ZNF711Q9Y462 761 aa10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 PASKQ96RG2 1323 aa10.14□□□□□ -0.79
CTNNA1-243ENST00000540387 NPHP3-ACAD11A0A0J9YXS1 232 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 B4E1Z4 1266 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 EPHB6O15197 1021 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 TTI1O43156 1089 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 ASMTLO95671 621 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 PABPC4LP0CB38 370 aaKnown RBP10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 SMARCA1P28370 1054 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 GMPSP49915 693 aaPredicted RBP10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 GALK1P51570 392 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 ASTE1Q2TB18 679 aaPredicted RBP10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 TMEM259Q4ZIN3 620 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 C6orf118Q5T5N4 469 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 RBM26Q5T8P6 1007 aaKnown RBP10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 DENND2CQ68D51 928 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 PHLDB3Q6NSJ2 640 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 MFSD6Q6ZSS7 791 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 ZFPM1Q8IX07 1006 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 NEK9Q8TD19 979 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 OXER1Q8TDS5 423 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 SEC14L1Q92503 715 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 NMD3Q96D46 503 aaKnown RBP10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 ERP27Q96DN0 273 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 ERGIC2Q96RQ1 377 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 ZNF184Q99676 751 aaPredicted RBP10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 ZMYND12Q9H0C1 365 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 PABPC3Q9H361 631 aaKnown RBP10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 MYH4Q9Y623 1939 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 SPDYE2BA6NHP3 402 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 GOLGA8AA7E2F4 631 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 P4HA2O15460 535 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 ZBTB43O43298 467 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 ATP9BO43861 1147 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 PRDM1O75626 825 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 EGFRP00533 1210 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 SPDYE6P0CI01 402 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 TROVE2P10155 538 aaKnown RBP eCLIP10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 NEK3P51956 506 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 SLC34A1Q06495 639 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 AP1B1Q10567 949 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 KCNMA1Q12791 1236 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 TCP10Q12799 353 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 DLGAP5Q15398 846 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 NAB2Q15742 525 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 SBK1Q52WX2 424 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 C12orf60Q5U649 245 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 C9orf131Q5VYM1 1079 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 PDXDC2PQ6P474 469 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 TRIM50Q86XT4 487 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 SDR16C5Q8N3Y7 309 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 PPFIBP2Q8ND30 876 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 DEPTORQ8TB45 409 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 LBHD1Q9BQE6 289 aaPredicted RBP10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 MYL10Q9BUA6 226 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 DDX43Q9NXZ2 648 aaKnown RBP10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 IL1RAPL1Q9NZN1 696 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 ARPP21Q9UBL0 812 aaPredicted RBP10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 ITGB1BP2Q9UKP3 347 aa10.13□□□□□ -0.79
CTNNA1-243ENST00000540387 CLRN2A0PK11 232 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 TRIM75PA6NK02 468 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 CAPN9O14815 690 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 MAP3K7O43318 606 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 KRT36O76013 467 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 HARSP12081 509 aaKnown RBP10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 KLRC1P26715 233 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 SLCO1A2P46721 670 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 PMS2P54278 862 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 ACVR2BQ13705 512 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 CLPPQ16740 277 aaPredicted RBP10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 MIIPQ5JXC2 388 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 ZNF362Q5T0B9 420 aaPredicted RBP10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 RFWD3Q6PCD5 774 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 C4orf50Q6ZRC1 276 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 HS2ST1Q7LGA3 356 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 NME8Q8N427 588 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 DYNLL2Q96FJ2 89 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 NAP1L3Q99457 506 aaPredicted RBP10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 CELF4Q9BZC1 486 aaKnown RBP10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 TRIM31Q9BZY9 425 aa10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 CNOT7Q9UIV1 285 aaKnown RBP10.12□□□□□ -0.79
CTNNA1-243ENST00000540387 MAST2Q6P0Q8 1798 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms