RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 CPB2Q96IY4 423 aa17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 MTRQ99707 1265 aa17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 APOL6Q9BWW8 343 aa17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 EIF2AQ9BY44 585 aaKnown RBP17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 IPPQ9Y573 584 aa17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 FRYQ5TBA9 3013 aa17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 INPPL1O15357 1258 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 TEX28O15482 410 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 TSPAN1O60635 241 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 LILRB3O75022 631 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 AOC1P19801 751 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 SCNN1GP51170 649 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 CUL4AQ13619 759 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 TRIM29Q14134 588 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 CTTNQ14247 550 aaKnown RBP17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 PIK3AP1Q6ZUJ8 805 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 OTUD6AQ7L8S5 288 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 TAS1R1Q7RTX1 841 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 C4orf19Q8IY42 314 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 COLGALT2Q8IYK4 626 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 SMG8Q8ND04 991 aaKnown RBP17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 CMASQ8NFW8 434 aaPredicted RBP17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 DYDC2Q96IM9 177 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 RPS6KC1Q96S38 1066 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 GAD1Q99259 594 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 NAP1L4Q99733 375 aaKnown RBP17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 UBN1Q9NPG3 1134 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 RGL1Q9NZL6 768 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 SSX2IPQ9Y2D8 614 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 HES2Q9Y543 173 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 CACNA1IQ9P0X4 2223 aa17.49■□□□□ 0.39
CHMP4A-207ENST00000533523 CCDC195A0A1B0GUA6 201 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 ARL5CA6NH57 179 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 F8W810 466 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 INO80B-WBP1J3KQ70 363 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 STK25O00506 426 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 NARSO43776 548 aaKnown RBP17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 N4BP1O75113 896 aaKnown RBP17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 FDPSP14324 419 aaKnown RBP17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 KRT2P35908 639 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 ST3GAL1Q11201 340 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 EPHA7Q15375 998 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 PPP4R3AQ6IN85 833 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 NOTUMQ6P988 496 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 CCDC83Q8IWF9 413 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 CCDC105Q8IYK2 499 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 CNNM3Q8NE01 707 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 SMG7Q92540 1137 aaKnown RBP17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 STAMQ92783 540 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 HAS1Q92839 578 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 CCDC51Q96ER9 411 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 CCDC43Q96MW1 224 aaKnown RBP17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 LLPHQ9BRT6 129 aaKnown RBP17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 TRIM6Q9C030 488 aaPredicted RBP17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 IGSF9Q9P2J2 1179 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 TRIP11Q15643 1979 aa17.48■□□□□ 0.39
CHMP4A-207ENST00000533523 ZBTB39O15060 712 aa17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 ASAP2O43150 1006 aa17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 RFPL2O75678 378 aa17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 CFHP08603 1231 aa17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 ANGPT1Q15389 498 aa17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 GLYCTKQ8IVS8 523 aa17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 SPRYD3Q8NCJ5 442 aa17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 OXER1Q8TDS5 423 aa17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 RSAD2Q8WXG1 361 aa17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 ZFP42Q96MM3 310 aa17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 RTP3Q9BQQ7 232 aa17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 RNF39Q9H2S5 420 aa17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 NXF3Q9H4D5 531 aaKnown RBP17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 ZSWIM4Q9H7M6 989 aa17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 DPP7Q9UHL4 492 aa17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 VWA8A3KMH1 1905 aa17.47■□□□□ 0.39
CHMP4A-207ENST00000533523 TBX3O15119 743 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 JAK2O60674 1132 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 DTNBO60941 627 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 NR1I2O75469 434 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 HSP90AA1P07900 732 aaKnown RBP17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 SPATA31D3P0C874 917 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 AXLP30530 894 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 HMGN5P82970 282 aaKnown RBP17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 DSC1Q08554 894 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 NCBP1Q09161 790 aaKnown RBP17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 TFDP1Q14186 410 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 MXD4Q14582 209 aaPredicted RBP17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 SPATA31D4Q6ZUB0 917 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 TPH2Q8IWU9 490 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 HACE1Q8IYU2 909 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 DTWD2Q8NBA8 298 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 B3GALT6Q96L58 329 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 MYADMQ96S97 322 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 CSRNP2Q9H175 543 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 WDR6Q9NNW5 1121 aaKnown RBP17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 XPNPEP1Q9NQW7 623 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 GJB4Q9NTQ9 266 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 FOXD4L1Q9NU39 408 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 CA14Q9ULX7 337 aa17.46■□□□□ 0.39
CHMP4A-207ENST00000533523 FAM205CA6NFA0 338 aa17.45■□□□□ 0.38
CHMP4A-207ENST00000533523 BAG4O95429 457 aaKnown RBP17.45■□□□□ 0.38
CHMP4A-207ENST00000533523 PTENP60484 403 aa17.45■□□□□ 0.38
CHMP4A-207ENST00000533523 DSG1Q02413 1049 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms