RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 MIS18BP1Q6P0N0 1132 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 CKAP2LQ8IYA6 745 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 RNF168Q8IYW5 571 aaPredicted RBP9.3□□□□□ -0.92
CD44-232ENST00000531118 KDF1Q8NAX2 398 aaPredicted RBP9.3□□□□□ -0.92
CD44-232ENST00000531118 URGCPQ8TCY9 931 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 HDAC7Q8WUI4 952 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 MAP4K1Q92918 833 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 THAP11Q96EK4 314 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 PGBD1Q96JS3 809 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 KXD1Q9BQD3 176 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 TMEM175Q9BSA9 504 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 PHF20Q9BVI0 1012 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 TRAIPQ9BWF2 469 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 PRKD2Q9BZL6 878 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 CHRDQ9H2X0 955 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 PLEKHA4Q9H4M7 779 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 LY9Q9HBG7 655 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 RXFP1Q9HBX9 757 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 ASH1LQ9NR48 2969 aaKnown RBP9.3□□□□□ -0.92
CD44-232ENST00000531118 FAM105AQ9NUU6 356 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 CEP131Q9UPN4 1083 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 PIN4Q9Y237 131 aaKnown RBP9.3□□□□□ -0.92
CD44-232ENST00000531118 SSX2IPQ9Y2D8 614 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 PRG3Q9Y2Y8 225 aaPredicted RBP9.3□□□□□ -0.92
CD44-232ENST00000531118 WDFY3Q8IZQ1 3526 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 VWA8A3KMH1 1905 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 ERICH2A1L162 156 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 SHISA7A6NL88 538 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 IFIT3O14879 490 aaKnown RBP9.29□□□□□ -0.92
CD44-232ENST00000531118 MAGEB2O15479 319 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 TGM5O43548 720 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 CSDE1O75534 798 aaKnown RBP9.29□□□□□ -0.92
CD44-232ENST00000531118 DDHD2O94830 711 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 PLEKHA8P1O95397 391 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 ADH1BP00325 375 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 SPATA31D3P0C874 917 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 SDSP20132 328 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 SFPQP23246 707 aaKnown RBP eCLIP9.29□□□□□ -0.92
CD44-232ENST00000531118 TMOD1P28289 359 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 NTHL1P78549 312 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 FZD5Q13467 585 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 SIM2Q14190 667 aaPredicted RBP9.29□□□□□ -0.92
CD44-232ENST00000531118 CEP55Q53EZ4 464 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 SWSAP1Q6NVH7 229 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 EFCAB12Q6NXP0 572 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 BRICD5Q6PL45 260 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 SPATA31D4Q6ZUB0 917 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 TRMT1LQ7Z2T5 733 aaKnown RBP9.29□□□□□ -0.92
CD44-232ENST00000531118 CATIPQ7Z7H3 387 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 ZNF516Q92618 1163 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 RILPL2Q969X0 211 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 FAM167AQ96KS9 214 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 PCMTD1Q96MG8 357 aaPredicted RBP9.29□□□□□ -0.92
CD44-232ENST00000531118 IER2Q9BTL4 223 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 CHST12Q9NRB3 414 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 PLA2G2EQ9NZK7 142 aa9.29□□□□□ -0.92
CD44-232ENST00000531118 MRPS17Q9Y2R5 130 aaKnown RBP9.29□□□□□ -0.92
CD44-232ENST00000531118 HELZ2Q9BYK8 2649 aaKnown RBP9.29□□□□□ -0.92
CD44-232ENST00000531118 EML5Q05BV3 1969 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 TMEM8BA6NDV4 472 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 NRP1O14786 923 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 TM4SF5O14894 197 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 DDAH1O94760 285 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 EFEMP2O95967 443 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 SKIP12755 728 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 NCLP19338 710 aaKnown RBP9.28□□□□□ -0.92
CD44-232ENST00000531118 CCR3P51677 355 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 DSG1Q02413 1049 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 ADCY1Q08828 1119 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 SRSF5Q13243 272 aaKnown RBP9.28□□□□□ -0.92
CD44-232ENST00000531118 PPP2R5DQ14738 602 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 TMEM132AQ24JP5 1023 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 CWC27Q6UX04 472 aaKnown RBP9.28□□□□□ -0.92
CD44-232ENST00000531118 ZNF852Q6ZMS4 543 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 TAS1R1Q7RTX1 841 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 GRASPQ7Z6J2 395 aaPredicted RBP9.28□□□□□ -0.92
CD44-232ENST00000531118 CTCFLQ8NI51 663 aaPredicted RBP9.28□□□□□ -0.92
CD44-232ENST00000531118 FGF13Q92913 245 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 FAM193BQ96PV7 902 aaPredicted RBP9.28□□□□□ -0.92
CD44-232ENST00000531118 NELL2Q99435 816 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 ANO3Q9BYT9 981 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 RSAD1Q9HA92 442 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 HEBP1Q9NRV9 189 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 DIAPH3Q9NSV4 1193 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 FBXW11Q9UKB1 542 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 PCDHGC3Q9UN70 934 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 FAN1Q9Y2M0 1017 aa9.28□□□□□ -0.92
CD44-232ENST00000531118 MAFBQ9Y5Q3 323 aaPredicted RBP9.28□□□□□ -0.92
CD44-232ENST00000531118 DSPP15924 2871 aaKnown RBP9.28□□□□□ -0.92
CD44-232ENST00000531118 AKAP13Q12802 2813 aa9.27□□□□□ -0.92
CD44-232ENST00000531118 SRRM3A6NNA2 597 aaPredicted RBP9.27□□□□□ -0.93
CD44-232ENST00000531118 MEIS1O00470 390 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 DHX15O43143 795 aaKnown RBP9.27□□□□□ -0.93
CD44-232ENST00000531118 KCNK5O95279 499 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 C1RP00736 705 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 AFF1P51825 1210 aaKnown RBP9.27□□□□□ -0.93
CD44-232ENST00000531118 RING1Q06587 406 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 TRDNQ13061 729 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 SART3Q15020 963 aaKnown RBP9.27□□□□□ -0.93
CD44-232ENST00000531118 SF3A2Q15428 464 aaKnown RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms