RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 VPS54Q9P1Q0 977 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 FBXO4Q9UKT5 387 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 CDH7Q9ULB5 785 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 IPPQ9Y573 584 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 PCDHGA2Q9Y5H1 932 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 CNTNAP2Q9UHC6 1331 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 ARID2Q68CP9 1835 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 IGKV6-21A0A0C4DH24 114 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13□□□□□ -0.33
SDCBP-211ENST00000523441 PRR5-ARHGAP8B1AHC4 643 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 TADA2AO75478 443 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 ZMYND10O75800 440 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 NCLP19338 710 aaKnown RBP13□□□□□ -0.33
SDCBP-211ENST00000523441 AKAP5P24588 427 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 TARSP26639 723 aaKnown RBP13□□□□□ -0.33
SDCBP-211ENST00000523441 GNA11P29992 359 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 CIITAP33076 1130 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 ARHGAP8P85298 464 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 AKAP17AQ02040 695 aaKnown RBP13□□□□□ -0.33
SDCBP-211ENST00000523441 NECTIN1Q15223 517 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 USP41Q3LFD5 358 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 ZNF528Q3MIS6 628 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 ADCK5Q3MIX3 580 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 ZBTB41Q5SVQ8 909 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 LIN9Q5TKA1 542 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 ANO5Q75V66 913 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 GPR161Q8N6U8 529 aaKnown RBP13□□□□□ -0.33
SDCBP-211ENST00000523441 RNF149Q8NC42 400 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 FGF13Q92913 245 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 CEP170P1Q96L14 293 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 ESYT1Q9BSJ8 1104 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 RTKNQ9BST9 563 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 PHF20Q9BVI0 1012 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 TRIM6Q9C030 488 aaPredicted RBP13□□□□□ -0.33
SDCBP-211ENST00000523441 HEBP1Q9NRV9 189 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 HCFC1R1Q9NWW0 138 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 ZDHHC7Q9NXF8 308 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 RAB23Q9ULC3 237 aa13□□□□□ -0.33
SDCBP-211ENST00000523441 USP24Q9UPU5 2620 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 ESYT2A0FGR8 921 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 EDIL3O43854 480 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 PSMD10O75832 226 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 C8AP07357 584 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 ADRB1P08588 477 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 HOXA11P31270 313 aaPredicted RBP12.99□□□□□ -0.33
SDCBP-211ENST00000523441 PRKCQQ04759 706 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 LAMTOR4Q0VGL1 99 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 MTSS1LQ765P7 747 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 TEX2Q8IWB9 1127 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 BICD2Q8TD16 824 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 TBCKQ8TEA7 893 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 PSPC1Q8WXF1 523 aaKnown RBP12.99□□□□□ -0.33
SDCBP-211ENST00000523441 SLC7A3Q8WY07 619 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 MCRS1Q96EZ8 462 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 YTHDC1Q96MU7 727 aaKnown RBP12.99□□□□□ -0.33
SDCBP-211ENST00000523441 SLC26A6Q9BXS9 759 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 NXF3Q9H4D5 531 aaKnown RBP12.99□□□□□ -0.33
SDCBP-211ENST00000523441 PARP2Q9UGN5 583 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 ADAM28Q9UKQ2 775 aa12.99□□□□□ -0.33
SDCBP-211ENST00000523441 CHD6Q8TD26 2715 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 INO80B-WBP1J3KQ70 363 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 NLRP5P59047 1200 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 EXOSC10Q01780 885 aaKnown RBP12.98□□□□□ -0.33
SDCBP-211ENST00000523441 MTAPQ13126 283 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 RTP2Q5QGT7 225 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 RNF20Q5VTR2 975 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 LILRA6Q6PI73 481 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 DHX32Q7L7V1 743 aaKnown RBP12.98□□□□□ -0.33
SDCBP-211ENST00000523441 SRGAP1Q7Z6B7 1085 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 ZBTB44Q8NCP5 570 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 SLC7A14Q8TBB6 771 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 HDAC7Q8WUI4 952 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 PAAF1Q9BRP4 392 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 PLA2G2FQ9BZM2 168 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 EPC1Q9H2F5 836 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 UBN1Q9NPG3 1134 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.98□□□□□ -0.33
SDCBP-211ENST00000523441 CHST7Q9NS84 486 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 TICRRQ7Z2Z1 1910 aa12.98□□□□□ -0.33
SDCBP-211ENST00000523441 CFAP47Q6ZTR5 3102 aa12.97□□□□□ -0.33
SDCBP-211ENST00000523441 CASTOR2A6NHX0 329 aa12.97□□□□□ -0.33
SDCBP-211ENST00000523441 EML1O00423 815 aa12.97□□□□□ -0.33
SDCBP-211ENST00000523441 ADAM12O43184 909 aa12.97□□□□□ -0.33
SDCBP-211ENST00000523441 TSPAN1O60635 241 aa12.97□□□□□ -0.33
SDCBP-211ENST00000523441 NPTXRO95502 500 aa12.97□□□□□ -0.33
SDCBP-211ENST00000523441 PSMC5P62195 406 aa12.97□□□□□ -0.33
SDCBP-211ENST00000523441 IRX6P78412 446 aaPredicted RBP12.97□□□□□ -0.33
SDCBP-211ENST00000523441 PFKPQ01813 784 aa12.97□□□□□ -0.33
SDCBP-211ENST00000523441 DSC1Q08554 894 aa12.97□□□□□ -0.33
SDCBP-211ENST00000523441 GRM2Q14416 872 aa12.97□□□□□ -0.33
SDCBP-211ENST00000523441 PSMD5Q16401 504 aa12.97□□□□□ -0.33
SDCBP-211ENST00000523441 FAM171A1Q5VUB5 890 aa12.97□□□□□ -0.33
SDCBP-211ENST00000523441 NOTUMQ6P988 496 aa12.97□□□□□ -0.33
SDCBP-211ENST00000523441 RNF168Q8IYW5 571 aaPredicted RBP12.97□□□□□ -0.33
SDCBP-211ENST00000523441 RASEFQ8IZ41 740 aa12.97□□□□□ -0.33
SDCBP-211ENST00000523441 JPH2Q9BR39 696 aaPredicted RBP12.97□□□□□ -0.33
SDCBP-211ENST00000523441 DDX23Q9BUQ8 820 aaKnown RBP12.97□□□□□ -0.33
SDCBP-211ENST00000523441 RHOBTB2Q9BYZ6 727 aa12.97□□□□□ -0.33
SDCBP-211ENST00000523441 ZBTB39O15060 712 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 NCAM2O15394 837 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms