RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 ZNF157P51786 506 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 TXNRD1Q16881 649 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 DNAL1Q4LDG9 190 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 SPOPLQ6IQ16 392 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 SIX6OS1Q8N1H7 587 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 STAG2Q8N3U4 1231 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 DNAAF3Q8N9W5 541 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 PYROXD1Q8WU10 500 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 C19orf60Q96EN9 201 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 NEUROG2Q9H2A3 272 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 UBE2TQ9NPD8 197 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 COPRSQ9NQ92 184 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 IPPQ9Y573 584 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 USP17L3A6NCW0 530 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 USP17L4A6NCW7 530 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 A6NJR5 290 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 MEIS1O00470 390 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 CTIFO43310 598 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 KRT16P08779 473 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 USP17L8P0C7I0 530 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 PYGMP11217 842 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 PIK3CAP42336 1068 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 CTSWP56202 376 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 VSNL1P62760 191 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 TFDP1Q14186 410 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 NECTIN1Q15223 517 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 UBE3CQ15386 1083 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 PLEKHA7Q6IQ23 1121 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 C4orf50Q6ZRC1 276 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 SH3BP5LQ7L8J4 393 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 USP17L1Q7RTZ2 530 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 SUGP1Q8IWZ8 645 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 CCNYQ8ND76 341 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 B3GALT6Q96L58 329 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 WDR24Q96S15 920 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 IRX2Q9BZI1 471 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 OSBPL5Q9H0X9 879 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 FRMPD1Q5SYB0 1578 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 ABCC12Q96J65 1359 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 GOLGA8JA6NMD2 632 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 GOLGA8TH3BQL2 631 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 M0R2C6 588 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 COPEO14579 308 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 GUCY1B2O75343 617 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 SEMA3DO95025 777 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 BRAFP15056 766 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 MARK3P27448 753 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 IFRD2Q12894 506 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 SEMA3FQ13275 785 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 VPS72Q15906 364 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 PDZD4Q76G19 769 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 ARHGEF25Q86VW2 580 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 OLFM1Q99784 485 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 EMILIN3Q9NT22 766 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 EURLQ9NYK6 297 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 RABGEF1Q9UJ41 708 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 SPATA2Q9UM82 520 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 ADGRG1Q9Y653 693 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 CHEK2O96017 543 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 GSNP06396 782 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 OCM2P0CE71 109 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 OCMP0CE72 109 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 KCNA2P16389 499 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 PLCG1P19174 1290 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 RECQLP46063 649 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 RCN1Q15293 331 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 CCDC142Q17RM4 750 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 PI16Q6UXB8 463 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 TRIM67Q6ZTA4 783 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 RSRC2Q7L4I2 434 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 GPR141Q7Z602 305 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 KIRREL3Q8IZU9 778 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 PDIK1LQ8N165 341 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 RTL3Q8N8U3 475 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 TBCKQ8TEA7 893 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 DPF3Q92784 378 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 CDHR1Q96JP9 859 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 AK8Q96MA6 479 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 DEPDC7Q96QD5 511 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 EDEM3Q9BZQ6 932 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 VIPAS39Q9H9C1 493 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 ZSCAN32Q9NX65 697 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 KIF17Q9P2E2 1029 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 IPO11Q9UI26 975 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 GGT7Q9UJ14 662 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 PCDHA4Q9UN74 947 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 PRR36Q9H6K5 1346 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 SEMA3EO15041 775 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 NCK2O43639 380 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 ALAS1P13196 640 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 IFNAR1P17181 557 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 CRKLP46109 303 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 DMP1Q13316 513 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 POLA2Q14181 598 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 PRPSAP1Q14558 356 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 FBXO11Q86XK2 927 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 NMD3Q96D46 503 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 ZNF341Q9BYN7 854 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 DDX47Q9H0S4 455 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms