RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 CTTNQ14247 550 aaKnown RBP8.9□□□□□ -0.98
SCN1A-207ENST00000507401 XKR9Q5GH70 373 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 PLA2G4FQ68DD2 849 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 CAVIN1Q6NZI2 390 aaKnown RBP8.9□□□□□ -0.98
SCN1A-207ENST00000507401 LRRC55Q6ZSA7 311 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 CATSPER4Q7RTX7 472 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 FERMT3Q86UX7 667 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 KSR1Q8IVT5 923 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 CCDC83Q8IWF9 413 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 FAM178BQ8IXR5 827 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 LRRC43Q8N309 656 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 EFHBQ8N7U6 833 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 COLGALT1Q8NBJ5 622 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 ZNF668Q96K58 619 aaPredicted RBP8.9□□□□□ -0.98
SCN1A-207ENST00000507401 CDCA3Q99618 268 aaPredicted RBP8.9□□□□□ -0.98
SCN1A-207ENST00000507401 MRPL9Q9BYD2 267 aaKnown RBP8.9□□□□□ -0.98
SCN1A-207ENST00000507401 RNF19AQ9NV58 838 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 CLDND1Q9NY35 253 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 CALCOCO1Q9P1Z2 691 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 PRKAG3Q9UGI9 489 aa8.9□□□□□ -0.98
SCN1A-207ENST00000507401 KIAA1671Q9BY89 1806 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 ZBTB39O15060 712 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 SPTLC1O15269 473 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 ZBTB24O43167 697 aaPredicted RBP8.89□□□□□ -0.99
SCN1A-207ENST00000507401 CSDE1O75534 798 aaKnown RBP8.89□□□□□ -0.99
SCN1A-207ENST00000507401 SRGAP2CP0DJJ0 459 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 MUTP22033 750 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 FGFR4P22455 802 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 U2AF2P26368 475 aaKnown RBP eCLIP8.89□□□□□ -0.99
SCN1A-207ENST00000507401 AXLP30530 894 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 PPM1AP35813 382 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 ARL2P36404 184 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 PTENP60484 403 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 SKOR1P84550 965 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 CYP4A11Q02928 519 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 NCBP1Q09161 790 aaKnown RBP8.89□□□□□ -0.99
SCN1A-207ENST00000507401 TFDP1Q14186 410 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 PDIA5Q14554 519 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 EMC2Q15006 297 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 PKDCCQ504Y2 493 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 CLLU1OSQ5K130 101 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 DNTTIP2Q5QJE6 756 aaKnown RBP8.89□□□□□ -0.99
SCN1A-207ENST00000507401 TWF2Q6IBS0 349 aaKnown RBP8.89□□□□□ -0.99
SCN1A-207ENST00000507401 KCNT2Q6UVM3 1135 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 MRPL10Q7Z7H8 261 aaKnown RBP8.89□□□□□ -0.99
SCN1A-207ENST00000507401 NOSTRINQ8IVI9 506 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 THNSL1Q8IYQ7 743 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 CNNM3Q8NE01 707 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 ERMNQ8TAM6 284 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 MICAL1Q8TDZ2 1067 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 MRPS27Q92552 414 aaKnown RBP8.89□□□□□ -0.99
SCN1A-207ENST00000507401 TMEM143Q96AN5 459 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 PGBD4Q96DM1 585 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 NLRP4Q96MN2 994 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 NECAB3Q96P71 396 aaPredicted RBP8.89□□□□□ -0.99
SCN1A-207ENST00000507401 NACC1Q96RE7 527 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 POLR3CQ9BUI4 534 aaPredicted RBP8.89□□□□□ -0.99
SCN1A-207ENST00000507401 C1QTNF1Q9BXJ1 281 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 NFKBIZQ9BYH8 718 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 TSPY26PQ9H489 355 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 TUFT1Q9NNX1 390 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 NGRNQ9NPE2 291 aaKnown RBP8.89□□□□□ -0.99
SCN1A-207ENST00000507401 UBN1Q9NPG3 1134 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 TLR9Q9NR96 1032 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 AGPAT5Q9NUQ2 364 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 FAM105AQ9NUU6 356 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 SPG21Q9NZD8 308 aa8.89□□□□□ -0.99
SCN1A-207ENST00000507401 DBR1Q9UK59 544 aaKnown RBP8.89□□□□□ -0.99
SCN1A-207ENST00000507401 FAM187AA6NFU0 413 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 H3BQ06 376 aaPredicted RBP8.88□□□□□ -0.99
SCN1A-207ENST00000507401 WNT7AO00755 349 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 FSCN2O14926 492 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 EYA4O95677 639 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 SPATA31C1P0DKV0 1188 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 ATF7P17544 494 aaPredicted RBP8.88□□□□□ -0.99
SCN1A-207ENST00000507401 IBSPP21815 317 aaPredicted RBP8.88□□□□□ -0.99
SCN1A-207ENST00000507401 RPA1P27694 616 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 HOXA11P31270 313 aaPredicted RBP8.88□□□□□ -0.99
SCN1A-207ENST00000507401 MCM7P33993 719 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 IRS1P35568 1242 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 TECP42680 631 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 ALDH7A1P49419 539 aaKnown RBP8.88□□□□□ -0.99
SCN1A-207ENST00000507401 RARRES1P49788 294 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 ERVFC1P60507 584 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 GUCY1B3Q02153 619 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 COASYQ13057 564 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 NOLC1Q14978 699 aaKnown RBP eCLIP8.88□□□□□ -0.99
SCN1A-207ENST00000507401 SMAD2Q15796 467 aaKnown RBP8.88□□□□□ -0.99
SCN1A-207ENST00000507401 GLB1LQ6UWU2 654 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 TMEM184AQ6ZMB5 413 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 CATSPER3Q86XQ3 398 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 GJD3Q8N144 294 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 C4orf32Q8N8J7 132 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 RNF149Q8NC42 400 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 RNF169Q8NCN4 708 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 ANKRD7Q92527 254 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 ZNF558Q96NG5 402 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 TMEM60Q9H2L4 133 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 IGFLR1Q9H665 355 aa8.88□□□□□ -0.99
SCN1A-207ENST00000507401 TLE6Q9H808 572 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms