RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 KANK3Q6NY19 840 aa23.33■■□□□ 1.33
SQSTM1-210ENST00000506042 SIX5Q8N196 739 aa23.33■■□□□ 1.33
SQSTM1-210ENST00000506042 ZNF579Q8NAF0 562 aaKnown RBP23.33■■□□□ 1.33
SQSTM1-210ENST00000506042 C2orf40Q9H1Z8 148 aa23.33■■□□□ 1.33
SQSTM1-210ENST00000506042 SEMA4AQ9H3S1 761 aa23.33■■□□□ 1.33
SQSTM1-210ENST00000506042 PRMT7Q9NVM4 692 aaPredicted RBP23.33■■□□□ 1.33
SQSTM1-210ENST00000506042 FNIP2Q9P278 1114 aa23.33■■□□□ 1.33
SQSTM1-210ENST00000506042 PARP2Q9UGN5 583 aa23.33■■□□□ 1.33
SQSTM1-210ENST00000506042 ADAM28Q9UKQ2 775 aa23.33■■□□□ 1.33
SQSTM1-210ENST00000506042 WDFY4Q6ZS81 3184 aa23.32■■□□□ 1.32
SQSTM1-210ENST00000506042 SLITRK3O94933 977 aa23.32■■□□□ 1.32
SQSTM1-210ENST00000506042 SAFBQ15424 915 aaKnown RBP eCLIP23.32■■□□□ 1.32
SQSTM1-210ENST00000506042 LIN9Q5TKA1 542 aa23.32■■□□□ 1.32
SQSTM1-210ENST00000506042 FUT10Q6P4F1 479 aa23.32■■□□□ 1.32
SQSTM1-210ENST00000506042 ERMNQ8TAM6 284 aa23.32■■□□□ 1.32
SQSTM1-210ENST00000506042 CPB2Q96IY4 423 aa23.32■■□□□ 1.32
SQSTM1-210ENST00000506042 WRAP73Q9P2S5 460 aaPredicted RBP23.32■■□□□ 1.32
SQSTM1-210ENST00000506042 EPS15L1Q9UBC2 864 aa23.32■■□□□ 1.32
SQSTM1-210ENST00000506042 PRR23AA6NEV1 266 aa23.31■■□□□ 1.32
SQSTM1-210ENST00000506042 LRRIQ4A6NIV6 560 aa23.31■■□□□ 1.32
SQSTM1-210ENST00000506042 KIAA0319Q5VV43 1072 aa23.31■■□□□ 1.32
SQSTM1-210ENST00000506042 CCDC105Q8IYK2 499 aa23.31■■□□□ 1.32
SQSTM1-210ENST00000506042 SNX27Q96L92 541 aa23.31■■□□□ 1.32
SQSTM1-210ENST00000506042 EIF2AQ9BY44 585 aaKnown RBP23.31■■□□□ 1.32
SQSTM1-210ENST00000506042 MARCH5Q9NX47 278 aa23.31■■□□□ 1.32
SQSTM1-210ENST00000506042 NEFLP07196 543 aa23.3■■□□□ 1.32
SQSTM1-210ENST00000506042 SRFP11831 508 aa23.3■■□□□ 1.32
SQSTM1-210ENST00000506042 ARF4P18085 180 aaPredicted RBP23.3■■□□□ 1.32
SQSTM1-210ENST00000506042 TXKP42681 527 aa23.3■■□□□ 1.32
SQSTM1-210ENST00000506042 MBTD1Q05BQ5 628 aa23.3■■□□□ 1.32
SQSTM1-210ENST00000506042 SPIRE1Q08AE8 756 aa23.3■■□□□ 1.32
SQSTM1-210ENST00000506042 CAPSQ13938 189 aa23.3■■□□□ 1.32
SQSTM1-210ENST00000506042 ZC3H14Q6PJT7 736 aaKnown RBP23.3■■□□□ 1.32
SQSTM1-210ENST00000506042 SHDQ96IW2 340 aa23.3■■□□□ 1.32
SQSTM1-210ENST00000506042 POLR3FQ9H1D9 316 aaPredicted RBP23.3■■□□□ 1.32
SQSTM1-210ENST00000506042 N4BP3O15049 544 aa23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 B4GALT3O60512 393 aa23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 NPTXRO95502 500 aa23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 ARL2P36404 184 aa23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 PPP2R5AQ15172 486 aa23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 PALB2Q86YC2 1186 aa23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 RNF168Q8IYW5 571 aaPredicted RBP23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 DTWD2Q8NBA8 298 aa23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 OXER1Q8TDS5 423 aa23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 RIN2Q8WYP3 895 aaPredicted RBP23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 ZFP42Q96MM3 310 aa23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 HSD17B14Q9BPX1 270 aa23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 SMOC2Q9H3U7 446 aa23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 NXF3Q9H4D5 531 aaKnown RBP23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 CHST7Q9NS84 486 aa23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 HES2Q9Y543 173 aa23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 C2orf16Q68DN1 1984 aa23.29■■□□□ 1.32
SQSTM1-210ENST00000506042 A0A1B0GUA9 196 aa23.28■■□□□ 1.32
SQSTM1-210ENST00000506042 USO1O60763 962 aaKnown RBP23.28■■□□□ 1.32
SQSTM1-210ENST00000506042 XYLBO75191 536 aa23.28■■□□□ 1.32
SQSTM1-210ENST00000506042 RARRES1P49788 294 aa23.28■■□□□ 1.32
SQSTM1-210ENST00000506042 AFF1P51825 1210 aaKnown RBP23.28■■□□□ 1.32
SQSTM1-210ENST00000506042 TUSC3Q13454 348 aa23.28■■□□□ 1.32
SQSTM1-210ENST00000506042 HSP90AA2PQ14568 343 aaPredicted RBP23.28■■□□□ 1.32
SQSTM1-210ENST00000506042 ANGPT1Q15389 498 aa23.28■■□□□ 1.32
SQSTM1-210ENST00000506042 NACC1Q96RE7 527 aa23.28■■□□□ 1.32
SQSTM1-210ENST00000506042 PRKD2Q9BZL6 878 aa23.28■■□□□ 1.32
SQSTM1-210ENST00000506042 TUFT1Q9NNX1 390 aa23.28■■□□□ 1.32
SQSTM1-210ENST00000506042 XPNPEP1Q9NQW7 623 aa23.28■■□□□ 1.32
SQSTM1-210ENST00000506042 TPCN1Q9ULQ1 816 aa23.28■■□□□ 1.32
SQSTM1-210ENST00000506042 CFHP08603 1231 aa23.27■■□□□ 1.32
SQSTM1-210ENST00000506042 HNRNPA1P09651 372 aaKnown RBP eCLIP23.27■■□□□ 1.32
SQSTM1-210ENST00000506042 ATP2B1P20020 1258 aa23.27■■□□□ 1.32
SQSTM1-210ENST00000506042 NR5A1Q13285 461 aa23.27■■□□□ 1.32
SQSTM1-210ENST00000506042 MAPK6Q16659 721 aa23.27■■□□□ 1.32
SQSTM1-210ENST00000506042 CWF19L1Q69YN2 538 aaKnown RBP23.27■■□□□ 1.32
SQSTM1-210ENST00000506042 PPP4R3CPQ6ZMV5 832 aa23.27■■□□□ 1.32
SQSTM1-210ENST00000506042 MTSS1LQ765P7 747 aa23.27■■□□□ 1.32
SQSTM1-210ENST00000506042 NT5C3AQ9H0P0 336 aa23.27■■□□□ 1.32
SQSTM1-210ENST00000506042 TGM5O43548 720 aa23.26■■□□□ 1.31
SQSTM1-210ENST00000506042 THP07101 528 aa23.26■■□□□ 1.31
SQSTM1-210ENST00000506042 GLRA2P23416 452 aa23.26■■□□□ 1.31
SQSTM1-210ENST00000506042 AKAP5P24588 427 aa23.26■■□□□ 1.31
SQSTM1-210ENST00000506042 ORC2Q13416 577 aaPredicted RBP23.26■■□□□ 1.31
SQSTM1-210ENST00000506042 GET4Q7L5D6 327 aaPredicted RBP23.26■■□□□ 1.31
SQSTM1-210ENST00000506042 FRMD5Q7Z6J6 570 aa23.26■■□□□ 1.31
SQSTM1-210ENST00000506042 DIS3L2Q8IYB7 885 aaKnown RBP23.26■■□□□ 1.31
SQSTM1-210ENST00000506042 KCNG4Q8TDN1 519 aa23.26■■□□□ 1.31
SQSTM1-210ENST00000506042 TTPALQ9BTX7 342 aa23.26■■□□□ 1.31
SQSTM1-210ENST00000506042 RNF39Q9H2S5 420 aa23.26■■□□□ 1.31
SQSTM1-210ENST00000506042 ZBTB39O15060 712 aa23.25■■□□□ 1.31
SQSTM1-210ENST00000506042 RFPL2O75678 378 aa23.25■■□□□ 1.31
SQSTM1-210ENST00000506042 ZMYND10O75800 440 aa23.25■■□□□ 1.31
SQSTM1-210ENST00000506042 LAMP2P13473 410 aa23.25■■□□□ 1.31
SQSTM1-210ENST00000506042 PRPF4BQ13523 1007 aaKnown RBP23.25■■□□□ 1.31
SQSTM1-210ENST00000506042 HAUS3Q68CZ6 603 aa23.25■■□□□ 1.31
SQSTM1-210ENST00000506042 RTL10Q7L3V2 364 aa23.25■■□□□ 1.31
SQSTM1-210ENST00000506042 ASCL5Q7RTU5 278 aa23.25■■□□□ 1.31
SQSTM1-210ENST00000506042 TAS1R1Q7RTX1 841 aa23.25■■□□□ 1.31
SQSTM1-210ENST00000506042 SLC44A3Q8N4M1 653 aa23.25■■□□□ 1.31
SQSTM1-210ENST00000506042 DEPTORQ8TB45 409 aa23.25■■□□□ 1.31
SQSTM1-210ENST00000506042 ASAP3Q8TDY4 903 aa23.25■■□□□ 1.31
SQSTM1-210ENST00000506042 IFT74Q96LB3 600 aa23.25■■□□□ 1.31
SQSTM1-210ENST00000506042 STK24Q9Y6E0 443 aa23.25■■□□□ 1.31
SQSTM1-210ENST00000506042 PLXNA3P51805 1871 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms