RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 GAS2O43903 313 aaKnown RBP16.38■□□□□ 0.21
TRAF4-212ENST00000498540 LAMP2P13473 410 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 RPL17P18621 184 aaKnown RBP16.38■□□□□ 0.21
TRAF4-212ENST00000498540 PSMA5P28066 241 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 PTENP60484 403 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 HTR4Q13639 388 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 XKR9Q5GH70 373 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 GALNT17Q6IS24 598 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 PHLDB3Q6NSJ2 640 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 FUT10Q6P4F1 479 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 CENPQQ7L2Z9 268 aaPredicted RBP16.38■□□□□ 0.21
TRAF4-212ENST00000498540 KIAA2013Q8IYS2 634 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 HDAC7Q8WUI4 952 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 RABGGTAQ92696 567 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 DYDC2Q96IM9 177 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 MTRQ99707 1265 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 CSRNP2Q9H175 543 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 SEMA4AQ9H3S1 761 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 PLEKHA4Q9H4M7 779 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 ZDHHC7Q9NXF8 308 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 NUMBLQ9Y6R0 609 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 MIA3Q5JRA6 1907 aa16.38■□□□□ 0.21
TRAF4-212ENST00000498540 OTOGLQ3ZCN5 2332 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 INO80B-WBP1J3KQ70 363 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 AXLP30530 894 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 CYP4A11Q02928 519 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 MBTD1Q05BQ5 628 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 STK3Q13188 491 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 CTTNQ14247 550 aaKnown RBP16.37■□□□□ 0.21
TRAF4-212ENST00000498540 EPHA7Q15375 998 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 AMHR2Q16671 573 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 NCAPH2Q6IBW4 605 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 PPP4R3AQ6IN85 833 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 LILRA6Q6PI73 481 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 RUFY3Q7L099 469 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 NEK8Q86SG6 692 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 GSTCDQ8NEC7 633 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 CCDC51Q96ER9 411 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 COLEC11Q9BWP8 271 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 PRKD2Q9BZL6 878 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 FOXQ1Q9C009 403 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.37■□□□□ 0.216e-10■□□□□ 8.2
TRAF4-212ENST00000498540 CACNG4Q9UBN1 327 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 SIT1Q9Y3P8 196 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 CACNA1IQ9P0X4 2223 aa16.37■□□□□ 0.21
TRAF4-212ENST00000498540 DNAH14Q0VDD8 3507 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 CCDC194A0A1B0GVG4 234 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 MED19A0JLT2 244 aaPredicted RBP16.36■□□□□ 0.21
TRAF4-212ENST00000498540 POTEMA6NI47 508 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 CCNT1O60563 726 aaKnown RBP16.36■□□□□ 0.21
TRAF4-212ENST00000498540 NR1I2O75469 434 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 SP9P0CG40 484 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 GLULP15104 373 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 GCFC2P16383 781 aaKnown RBP16.36■□□□□ 0.21
TRAF4-212ENST00000498540 ARF4P18085 180 aaPredicted RBP16.36■□□□□ 0.21
TRAF4-212ENST00000498540 AKAP5P24588 427 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 SPIRE1Q08AE8 756 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 CAPSQ13938 189 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 PCBP1Q15365 356 aaKnown RBP eCLIP16.36■□□□□ 0.214e-7■■■■■ 32.7
TRAF4-212ENST00000498540 USP41Q3LFD5 358 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 DCLRE1AQ6PJP8 1040 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 OTUD6AQ7L8S5 288 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 CDR2LQ86X02 465 aaPredicted RBP16.36■□□□□ 0.21
TRAF4-212ENST00000498540 POTEDQ86YR6 584 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 IFNLR1Q8IU57 520 aaPredicted RBP16.36■□□□□ 0.21
TRAF4-212ENST00000498540 FAM177A1Q8N128 213 aaPredicted RBP16.36■□□□□ 0.21
TRAF4-212ENST00000498540 ASAP3Q8TDY4 903 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 RPP25Q9BUL9 199 aaKnown RBP16.36■□□□□ 0.21
TRAF4-212ENST00000498540 PHF20Q9BVI0 1012 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 SLC2A4RGQ9NR83 387 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.36■□□□□ 0.21
TRAF4-212ENST00000498540 FNIP2Q9P278 1114 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 ADAM28Q9UKQ2 775 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 GIT1Q9Y2X7 761 aa16.36■□□□□ 0.21
TRAF4-212ENST00000498540 PATJQ8NI35 1801 aa16.35■□□□□ 0.21
TRAF4-212ENST00000498540 TBX3O15119 743 aa16.35■□□□□ 0.21
TRAF4-212ENST00000498540 B4GALT5O43286 388 aa16.35■□□□□ 0.21
TRAF4-212ENST00000498540 LRRN2O75325 713 aa16.35■□□□□ 0.21
TRAF4-212ENST00000498540 C1RP00736 705 aa16.35■□□□□ 0.21
TRAF4-212ENST00000498540 MXD4Q14582 209 aaPredicted RBP16.35■□□□□ 0.21
TRAF4-212ENST00000498540 RTP2Q5QGT7 225 aa16.35■□□□□ 0.21
TRAF4-212ENST00000498540 PRSS55Q6UWB4 352 aaPredicted RBP16.35■□□□□ 0.21
TRAF4-212ENST00000498540 C1orf210Q8IVY1 113 aa16.35■□□□□ 0.21
TRAF4-212ENST00000498540 PJA1Q8NG27 643 aa16.35■□□□□ 0.21
TRAF4-212ENST00000498540 OXER1Q8TDS5 423 aa16.35■□□□□ 0.21
TRAF4-212ENST00000498540 ZNF274Q96GC6 653 aaPredicted RBP16.35■□□□□ 0.21
TRAF4-212ENST00000498540 TRIM6Q9C030 488 aaPredicted RBP16.35■□□□□ 0.21
TRAF4-212ENST00000498540 ZSWIM4Q9H7M6 989 aa16.35■□□□□ 0.21
TRAF4-212ENST00000498540 ZSWIM6Q9HCJ5 1215 aa16.35■□□□□ 0.21
TRAF4-212ENST00000498540 GJB4Q9NTQ9 266 aa16.35■□□□□ 0.21
TRAF4-212ENST00000498540 KLK14Q9P0G3 267 aa16.35■□□□□ 0.21
TRAF4-212ENST00000498540 CEP250Q9BV73 2442 aa16.35■□□□□ 0.21
TRAF4-212ENST00000498540 DTNBO60941 627 aa16.34■□□□□ 0.21
TRAF4-212ENST00000498540 ZMYND10O75800 440 aa16.34■□□□□ 0.21
TRAF4-212ENST00000498540 NPTXRO95502 500 aa16.34■□□□□ 0.21
TRAF4-212ENST00000498540 NTHL1P78549 312 aa16.34■□□□□ 0.21
TRAF4-212ENST00000498540 GRIK3Q13003 919 aa16.34■□□□□ 0.21
TRAF4-212ENST00000498540 TFDP1Q14186 410 aa16.34■□□□□ 0.21
TRAF4-212ENST00000498540 EARS2Q5JPH6 523 aaKnown RBP16.34■□□□□ 0.21
TRAF4-212ENST00000498540 ZC3H14Q6PJT7 736 aaKnown RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms