RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 STIM1Q13586 685 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 NOLC1Q14978 699 aaKnown RBP eCLIP13.01□□□□□ -0.331e-8■□□□□ 8.1
CUX1-210ENST00000497815 DCAF4L1Q3SXM0 396 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 KLHL10Q6JEL2 608 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 ARMCX5Q6P1M9 558 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 SASS6Q6UVJ0 657 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 RBM43Q6ZSC3 357 aaKnown RBP13.01□□□□□ -0.33
CUX1-210ENST00000497815 HS2ST1Q7LGA3 356 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 APBB1IPQ7Z5R6 666 aaPredicted RBP13.01□□□□□ -0.33
CUX1-210ENST00000497815 ADSSL1Q8N142 457 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 GUF1Q8N442 669 aaKnown RBP13.01□□□□□ -0.33
CUX1-210ENST00000497815 CEP120Q8N960 986 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 SMG8Q8ND04 991 aaKnown RBP13.01□□□□□ -0.33
CUX1-210ENST00000497815 CBWD1Q9BRT8 395 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 GTPBP4Q9BZE4 634 aaKnown RBP13.01□□□□□ -0.33
CUX1-210ENST00000497815 GOLGA8IPA6NC78 632 aa13□□□□□ -0.33
CUX1-210ENST00000497815 GOLGA8JA6NMD2 632 aa13□□□□□ -0.33
CUX1-210ENST00000497815 MEIS3P2A8K0S8 358 aa13□□□□□ -0.33
CUX1-210ENST00000497815 STAG3L1P0CL83 205 aa13□□□□□ -0.33
CUX1-210ENST00000497815 MCF2P10911 925 aa13□□□□□ -0.33
CUX1-210ENST00000497815 FGFR1P11362 822 aa13□□□□□ -0.33
CUX1-210ENST00000497815 SKIP12755 728 aa13□□□□□ -0.33
CUX1-210ENST00000497815 ITGA4P13612 1032 aa13□□□□□ -0.33
CUX1-210ENST00000497815 ATP2A2P16615 1042 aaKnown RBP13□□□□□ -0.33
CUX1-210ENST00000497815 ATF7P17544 494 aaPredicted RBP13□□□□□ -0.33
CUX1-210ENST00000497815 ADSSP30520 456 aa13□□□□□ -0.33
CUX1-210ENST00000497815 BMP8BP34820 402 aa13□□□□□ -0.33
CUX1-210ENST00000497815 GATMP50440 423 aa13□□□□□ -0.33
CUX1-210ENST00000497815 CYP2J2P51589 502 aa13□□□□□ -0.33
CUX1-210ENST00000497815 NLRP12P59046 1061 aa13□□□□□ -0.33
CUX1-210ENST00000497815 FAM189BP81408 668 aa13□□□□□ -0.33
CUX1-210ENST00000497815 MCL1Q07820 350 aa13□□□□□ -0.33
CUX1-210ENST00000497815 DPCR1Q3MIW9 517 aa13□□□□□ -0.33
CUX1-210ENST00000497815 RASIP1Q5U651 963 aa13□□□□□ -0.33
CUX1-210ENST00000497815 SLFN12LQ6IEE8 588 aa13□□□□□ -0.33
CUX1-210ENST00000497815 FAM43BQ6ZT52 329 aaPredicted RBP13□□□□□ -0.33
CUX1-210ENST00000497815 NPAS4Q8IUM7 802 aa13□□□□□ -0.33
CUX1-210ENST00000497815 HACE1Q8IYU2 909 aa13□□□□□ -0.33
CUX1-210ENST00000497815 PGBD4Q96DM1 585 aa13□□□□□ -0.33
CUX1-210ENST00000497815 SAAL1Q96ER3 474 aa13□□□□□ -0.33
CUX1-210ENST00000497815 ZBED2Q9BTP6 218 aa13□□□□□ -0.33
CUX1-210ENST00000497815 TRAIPQ9BWF2 469 aa13□□□□□ -0.33
CUX1-210ENST00000497815 KCTD10Q9H3F6 313 aa13□□□□□ -0.33
CUX1-210ENST00000497815 SEMA6BQ9H3T3 888 aa13□□□□□ -0.33
CUX1-210ENST00000497815 AGPAT3Q9NRZ7 376 aa13□□□□□ -0.33
CUX1-210ENST00000497815 TYW1Q9NV66 732 aaKnown RBP13□□□□□ -0.33
CUX1-210ENST00000497815 TMEM161AQ9NX61 479 aa13□□□□□ -0.33
CUX1-210ENST00000497815 SNTG2Q9NY99 539 aa13□□□□□ -0.33
CUX1-210ENST00000497815 PARP2Q9UGN5 583 aa13□□□□□ -0.33
CUX1-210ENST00000497815 AGO2Q9UKV8 859 aaKnown RBP13□□□□□ -0.33
CUX1-210ENST00000497815 CTNND2Q9UQB3 1225 aa13□□□□□ -0.33
CUX1-210ENST00000497815 A0A0B4J269 797 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 PPP1R3GB7ZBB8 358 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 PSMA7O14818 248 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 ZNF623O75123 536 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 TNFSF9P41273 254 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 ACOT2P49753 483 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 ZBTB41Q5SVQ8 909 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 FAM109BQ6ICB4 259 aaPredicted RBP12.99□□□□□ -0.33
CUX1-210ENST00000497815 MRPL10Q7Z7H8 261 aaKnown RBP12.99□□□□□ -0.33
CUX1-210ENST00000497815 ZNF598Q86UK7 904 aaKnown RBP12.99□□□□□ -0.33
CUX1-210ENST00000497815 HERC6Q8IVU3 1022 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 TMEM192Q8IY95 271 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 TDHQ8IZJ6 230 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 ZSWIM2Q8NEG5 633 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 HELQQ8TDG4 1101 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 TOP1MTQ969P6 601 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 SLC9A7Q96T83 725 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 CCDC94Q9BW85 323 aaPredicted RBP12.99□□□□□ -0.33
CUX1-210ENST00000497815 ELAC1Q9H777 363 aaKnown RBP12.99□□□□□ -0.33
CUX1-210ENST00000497815 RNF19AQ9NV58 838 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 KLK14Q9P0G3 267 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 COLQQ9Y215 455 aaPredicted RBP12.99□□□□□ -0.33
CUX1-210ENST00000497815 INPP5FQ9Y2H2 1132 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 STYXL1Q9Y6J8 313 aa12.99□□□□□ -0.33
CUX1-210ENST00000497815 SYCE3A1L190 88 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 TRIM49BA6NDI0 452 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 GRXCR1A8MXD5 290 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 PDXKO00764 312 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 OGTO15294 1046 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 CALUO43852 315 aaPredicted RBP12.98□□□□□ -0.33
CUX1-210ENST00000497815 RECQL4O94761 1208 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 EOMESO95936 686 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 NR3C1P04150 777 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 GARTP22102 1010 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 MLH1P40692 756 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 GRM5P41594 1212 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 RABGGTBP53611 331 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 PMS1P54277 932 aaKnown RBP12.98□□□□□ -0.33
CUX1-210ENST00000497815 STX17P56962 302 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 PAN2Q504Q3 1202 aaKnown RBP12.98□□□□□ -0.33
CUX1-210ENST00000497815 COBLL1Q53SF7 1204 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 CLLU1OSQ5K130 101 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 ANKRD40Q6AI12 368 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 AGMOQ6ZNB7 445 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 ABI1Q8IZP0 508 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 MLKLQ8NB16 471 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 GOLGA5Q8TBA6 731 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 NELFBQ8WX92 580 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 P2RX5Q93086 422 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms