RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ADAM22Q9P0K1 906 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 RSPH10B2B2RC85 870 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 TLR3O15455 904 aaKnown RBP17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 NOL3O60936 208 aaKnown RBP17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 DCTN3O75935 186 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 RSPH10BP0C881 870 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 CYP11B2P19099 503 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 FGFR4P22455 802 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 GMPSP49915 693 aaPredicted RBP17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 NPEPPSP55786 919 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 LONP2Q86WA8 852 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 C11orf70Q9BRQ4 267 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 LRRC4BQ9NT99 713 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 PLAGL2Q9UPG8 496 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 USP15Q9Y4E8 981 aaPredicted RBP17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 PHBP35232 272 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 ITIH3Q06033 890 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 MAP7D1Q3KQU3 841 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 KRT39Q6A163 491 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 SPATA21Q7Z572 469 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 ZFPM1Q8IX07 1006 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 ZKSCAN4Q969J2 545 aaPredicted RBP17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 ISCUQ9H1K1 167 aa17.38■□□□□ 0.37
CCDC88B-209ENST00000494080 KRT1P04264 644 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 CCND1P24385 295 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 GPC5P78333 572 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 LGSNQ5TDP6 509 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 HACE1Q8IYU2 909 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 USP38Q8NB14 1042 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 HEMGNQ9BXL5 484 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 TEX13BQ9BXU2 312 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 IGF2BP3O00425 579 aaKnown RBP eCLIP17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 MYBL2P10244 700 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 TSEN2Q8NCE0 465 aaKnown RBP17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 CELF4Q9BZC1 486 aaKnown RBP17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 RPF1Q9H9Y2 349 aaKnown RBP17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 JPH1Q9HDC5 661 aaPredicted RBP17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 SLC9A2Q9UBY0 812 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 A0A0G2JND7 137 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 GYG2O15488 501 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 RWDD2BP57060 319 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 TTI2Q6NXR4 508 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 ATG4CQ96DT6 458 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 FAM81BQ96LP2 452 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 MTRQ99707 1265 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 KCNH7Q9NS40 1196 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 ARL2BPQ9Y2Y0 163 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 KIF1AQ12756 1690 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 ATP5HO75947 161 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 ZNF280CQ8ND82 737 aa17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 PSPC1Q8WXF1 523 aaKnown RBP17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 FAF1Q9UNN5 650 aaPredicted RBP17.37■□□□□ 0.37
CCDC88B-209ENST00000494080 RGPD8O14715 1765 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 FSBPO95073 299 aa17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 ABL1P00519 1130 aa17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 SSTR3P32745 418 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 PMS1P54277 932 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 RPS6P62753 249 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 RHPN2Q8IUC4 686 aa17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 FGFR1OP2Q9NVK5 253 aa17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 GGA3Q9NZ52 723 aa17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 NUB1Q9Y5A7 615 aa17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 NRXN3Q9Y4C0 1643 aa17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 SOX5P35711 763 aa17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 DBN1Q16643 649 aa17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 RFX6Q8HWS3 928 aa17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 AENQ8WTP8 325 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 HAUS1Q96CS2 278 aa17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 DBR1Q9UK59 544 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 CREB3O43889 395 aa17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 LDHAP00338 332 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 SPARCL1Q14515 664 aa17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 EDRF1Q3B7T1 1238 aa17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 MSL3Q8N5Y2 521 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 DDX20Q9UHI6 824 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 FMN2Q9NZ56 1722 aa17.36■□□□□ 0.37
CCDC88B-209ENST00000494080 CASQ2O14958 399 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 SARSP49591 514 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 TRIM50Q86XT4 487 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 TMEM143Q96AN5 459 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 DCTN4Q9UJW0 460 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 PDE2AO00408 941 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 MAN1A1P33908 653 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 IRX4P78413 519 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 TMEM139Q8IV31 216 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 MXRA8Q9BRK3 442 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 CYP26A1O43174 497 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 FDX1P10109 184 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 ABCD1P33897 745 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 KLC1Q07866 573 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 ZNF568Q3ZCX4 644 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 OR6B2Q6IFH4 312 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 EPM2AIP1Q7L775 607 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 LRRC34Q8IZ02 419 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 FGD4Q96M96 766 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 SPDYE2BA6NHP3 402 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 LMNAP02545 664 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 SPDYE6P0CI01 402 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 FMO5P49326 533 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms