RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 LRRIQ4A6NIV6 560 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 MEIS3P2A8K0S8 358 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 INPPL1O15357 1258 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 GFRA3O60609 400 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 TADA2AO75478 443 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 SLITRK3O94933 977 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 GBP2P32456 591 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-213ENST00000493475 VCPP55072 806 aaKnown RBP12.83□□□□□ -0.36
COL6A3-213ENST00000493475 TCF15Q12870 199 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 GRIK3Q13003 919 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 ORC2Q13416 577 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-213ENST00000493475 UBXN11Q5T124 520 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 HAUS3Q68CZ6 603 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 DIS3L2Q8IYB7 885 aaKnown RBP12.83□□□□□ -0.36
COL6A3-213ENST00000493475 COLGALT2Q8IYK4 626 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 OXER1Q8TDS5 423 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 BCL7CQ8WUZ0 217 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-213ENST00000493475 GTF3C6Q969F1 213 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 NACC1Q96RE7 527 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 HSD17B14Q9BPX1 270 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 RTP3Q9BQQ7 232 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 APOL6Q9BWW8 343 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 MINDY3Q9H8M7 445 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 TUFT1Q9NNX1 390 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 ZDHHC7Q9NXF8 308 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 WRAP73Q9P2S5 460 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-213ENST00000493475 PARP2Q9UGN5 583 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 STK24Q9Y6E0 443 aa12.83□□□□□ -0.36
COL6A3-213ENST00000493475 SF3B1O75533 1304 aaKnown RBP eCLIP12.83□□□□□ -0.36
COL6A3-213ENST00000493475 WDR81Q562E7 1941 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 CCDC195A0A1B0GUA6 201 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 STK25O00506 426 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 N4BP3O15049 544 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 USO1O60763 962 aaKnown RBP12.82□□□□□ -0.36
COL6A3-213ENST00000493475 ASGR2P07307 311 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 RARRES1P49788 294 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 SCNN1GP51170 649 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 DSG1Q02413 1049 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 MBTD1Q05BQ5 628 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 SPIRE1Q08AE8 756 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 ELAVL2Q12926 359 aaKnown RBP12.82□□□□□ -0.36
COL6A3-213ENST00000493475 NR5A1Q13285 461 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 CAPSQ13938 189 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 PPP2R5AQ15172 486 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 LIN9Q5TKA1 542 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 SMG8Q8ND04 991 aaKnown RBP12.82□□□□□ -0.36
COL6A3-213ENST00000493475 FLCNQ8NFG4 579 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 CPB2Q96IY4 423 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 TMEM121BQ9BXQ6 578 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-213ENST00000493475 POLR3FQ9H1D9 316 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-213ENST00000493475 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.82□□□□□ -0.36
COL6A3-213ENST00000493475 DUSP12Q9UNI6 340 aa12.82□□□□□ -0.36
COL6A3-213ENST00000493475 ARHGEF35A5YM69 484 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 H0Y858 1186 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 TEX28O15482 410 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 PYGBP11216 843 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 ARF4P18085 180 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-213ENST00000493475 ATP2B1P20020 1258 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 ARL2P36404 184 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 DSC1Q08554 894 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 MAPK6Q16659 721 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 DEPTORQ8TB45 409 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 SMG7Q92540 1137 aaKnown RBP12.81□□□□□ -0.36
COL6A3-213ENST00000493475 IFT74Q96LB3 600 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 EIF2AQ9BY44 585 aaKnown RBP12.81□□□□□ -0.36
COL6A3-213ENST00000493475 RAB34Q9BZG1 259 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 KCNK12Q9HB15 430 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 RXFP1Q9HBX9 757 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 WDR6Q9NNW5 1121 aaKnown RBP12.81□□□□□ -0.36
COL6A3-213ENST00000493475 FNIP2Q9P278 1114 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 CDH22Q9UJ99 828 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 ADAM28Q9UKQ2 775 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 ZFP37Q9Y6Q3 630 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-213ENST00000493475 CLUHO75153 1309 aa12.81□□□□□ -0.36
COL6A3-213ENST00000493475 CACNA1HO95180 2353 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 A0A1B0GUA9 196 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 BTBD18B2RXH4 712 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 LILRB3O75022 631 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 NPTXRO95502 500 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 MUTP22033 750 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 GLRA2P23416 452 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 NEK4P51957 841 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 PRPF4BQ13523 1007 aaKnown RBP12.8□□□□□ -0.36
COL6A3-213ENST00000493475 HSP90AA2PQ14568 343 aaPredicted RBP12.8□□□□□ -0.36
COL6A3-213ENST00000493475 FUT10Q6P4F1 479 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 ASAP3Q8TDY4 903 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 PIGOQ8TEQ8 1089 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 RIN2Q8WYP3 895 aaPredicted RBP12.8□□□□□ -0.36
COL6A3-213ENST00000493475 ZFP42Q96MM3 310 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 VN1R3Q9BXE9 311 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 NXF3Q9H4D5 531 aaKnown RBP12.8□□□□□ -0.36
COL6A3-213ENST00000493475 XPNPEP1Q9NQW7 623 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 MARCH5Q9NX47 278 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 NOL7Q9UMY1 257 aaKnown RBP12.8□□□□□ -0.36
COL6A3-213ENST00000493475 HES2Q9Y543 173 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 PHLPP2Q6ZVD8 1323 aa12.8□□□□□ -0.36
COL6A3-213ENST00000493475 XYLBO75191 536 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 CTDNEP1O95476 244 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 PDGFBP01127 241 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-213ENST00000493475 THP07101 528 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms