RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	VPS72	Q15906	364 aa		6.6	□□□□□ -1.35
PTPN4-212	ENST00000488896	MUM1	Q2TAK8	710 aa		6.6	□□□□□ -1.35
PTPN4-212	ENST00000488896	PRAMEF14	Q5SWL7	426 aa		6.6	□□□□□ -1.35
PTPN4-212	ENST00000488896	BTNL9	Q6UXG8	535 aa		6.6	□□□□□ -1.35
PTPN4-212	ENST00000488896	HTR3D	Q70Z44	454 aa		6.6	□□□□□ -1.35
PTPN4-212	ENST00000488896	SLC25A43	Q8WUT9	341 aa	Predicted RBP	6.6	□□□□□ -1.35
PTPN4-212	ENST00000488896	CEP95	Q96GE4	821 aa		6.6	□□□□□ -1.35
PTPN4-212	ENST00000488896	ACE2	Q9BYF1	805 aa	Predicted RBP	6.6	□□□□□ -1.35
PTPN4-212	ENST00000488896	DMRT3	Q9NQL9	472 aa		6.6	□□□□□ -1.35
PTPN4-212	ENST00000488896	TRPS1	Q9UHF7	1281 aa		6.6	□□□□□ -1.35
PTPN4-212	ENST00000488896	PRKAB1	Q9Y478	270 aa		6.6	□□□□□ -1.35
PTPN4-212	ENST00000488896	OSM	P13725	252 aa		6.59	□□□□□ -1.35
PTPN4-212	ENST00000488896	NAIF1	Q69YI7	327 aa	Predicted RBP	6.59	□□□□□ -1.35
PTPN4-212	ENST00000488896	RNF169	Q8NCN4	708 aa		6.59	□□□□□ -1.35
PTPN4-212	ENST00000488896	LARP4B	Q92615	738 aa	Known RBP	6.59	□□□□□ -1.35
PTPN4-212	ENST00000488896	PDCD2L	Q9BRP1	358 aa		6.59	□□□□□ -1.35
PTPN4-212	ENST00000488896	GPRC5B	Q9NZH0	403 aa		6.59	□□□□□ -1.35
PTPN4-212	ENST00000488896	POGK	Q9P215	609 aa		6.59	□□□□□ -1.35
PTPN4-212	ENST00000488896	ZBTB21	Q9ULJ3	1066 aa		6.59	□□□□□ -1.35
PTPN4-212	ENST00000488896	GRXCR1	A8MXD5	290 aa		6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	RECQL4	O94761	1208 aa		6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	MTHFD2	P13995	350 aa		6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	POU3F3	P20264	500 aa	Predicted RBP	6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	GPR3	P46089	330 aa		6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	FAP	Q12884	760 aa		6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	ADRM1	Q16186	407 aa		6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	MFSD14B	Q5SR56	506 aa		6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	RNF219	Q5W0B1	726 aa	Predicted RBP	6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	PDZD4	Q76G19	769 aa	Predicted RBP	6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	DOK3	Q7L591	496 aa		6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	GPR156	Q8NFN8	814 aa		6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	FATE1	Q969F0	183 aa		6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	PAWR	Q96IZ0	340 aa	Known RBP	6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	UHRF1	Q96T88	793 aa	Predicted RBP	6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	NDC1	Q9BTX1	674 aa		6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	ZNF768	Q9H5H4	540 aa	Known RBP	6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	CCM2L	Q9NUG4	571 aa	Predicted RBP	6.58	□□□□□ -1.36
PTPN4-212	ENST00000488896	WASHC2A	Q641Q2	1341 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	LEFTY2	O00292	366 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	PHF2	O75151	1096 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	PEX11B	O96011	259 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	GAST	P01350	101 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	CRHR1	P34998	444 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	PER3	P56645	1201 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	TGFB2	P61812	414 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	NOMO1	Q15155	1222 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	CSRP2	Q16527	193 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	MST1L	Q2TV78	715 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	MUM1L1	Q5H9M0	696 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	EFCAB12	Q6NXP0	572 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	ZNF627	Q7L945	461 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	KCNK18	Q7Z418	384 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	OR10H5	Q8NGA6	315 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	STON2	Q8WXE9	905 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	TFAP2C	Q92754	450 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	HAS1	Q92839	578 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	PHACTR3	Q96KR7	559 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	SLC2A13	Q96QE2	648 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	ORAI2	Q96SN7	254 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	KCNH6	Q9H252	994 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	SPC25	Q9HBM1	224 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	TRPM5	Q9NZQ8	1165 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	MCM8	Q9UJA3	840 aa		6.57	□□□□□ -1.36
PTPN4-212	ENST00000488896	NR4A1	P22736	598 aa		6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896	ECHS1	P30084	290 aa		6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896	PTGS2	P35354	604 aa		6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896	RNASE9	P60153	205 aa	Known RBP	6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896	NHLH2	Q02577	135 aa		6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896	FAM180A	Q6UWF9	173 aa		6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896		Q6ZVL8	140 aa		6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896	GPRIN1	Q7Z2K8	1008 aa		6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896	DDX42	Q86XP3	938 aa	Known RBP eCLIP	6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896	SYNE4	Q8N205	404 aa		6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896	SLC35B2	Q8TB61	432 aa		6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896	ADI1	Q9BV57	179 aa		6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896	LDAH	Q9H6V9	325 aa		6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896	GREM2	Q9H772	168 aa		6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896	DNM3	Q9UQ16	869 aa		6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896	PCDHGA2	Q9Y5H1	932 aa		6.56	□□□□□ -1.36
PTPN4-212	ENST00000488896	TBKBP1	A7MCY6	615 aa		6.55	□□□□□ -1.36
PTPN4-212	ENST00000488896	AHRR	A9YTQ3	701 aa		6.55	□□□□□ -1.36
PTPN4-212	ENST00000488896		B5MCH6	92 aa		6.55	□□□□□ -1.36
PTPN4-212	ENST00000488896	TRIM24	O15164	1050 aa		6.55	□□□□□ -1.36
PTPN4-212	ENST00000488896	GSPT1	P15170	499 aa	Known RBP	6.55	□□□□□ -1.36
PTPN4-212	ENST00000488896	RAP2B	P61225	183 aa		6.55	□□□□□ -1.36
PTPN4-212	ENST00000488896	FAM189B	P81408	668 aa		6.55	□□□□□ -1.36
PTPN4-212	ENST00000488896	CLUL1	Q15846	466 aa		6.55	□□□□□ -1.36
PTPN4-212	ENST00000488896	METTL24	Q5JXM2	366 aa		6.55	□□□□□ -1.36
PTPN4-212	ENST00000488896	SYT12	Q8IV01	421 aa		6.55	□□□□□ -1.36
PTPN4-212	ENST00000488896	TRMT2A	Q8IZ69	625 aa	Known RBP	6.55	□□□□□ -1.36
PTPN4-212	ENST00000488896	PQLC1	Q8N2U9	271 aa		6.55	□□□□□ -1.36
PTPN4-212	ENST00000488896	PPM1N	Q8N819	430 aa		6.55	□□□□□ -1.36
PTPN4-212	ENST00000488896	RBM12	Q9NTZ6	932 aa	Known RBP	6.55	□□□□□ -1.36
PTPN4-212	ENST00000488896	SLC5A4	Q9NY91	659 aa		6.55	□□□□□ -1.36
PTPN4-212	ENST00000488896	WNT10B	O00744	389 aa		6.54	□□□□□ -1.36
PTPN4-212	ENST00000488896	SLC5A3	P53794	718 aa		6.54	□□□□□ -1.36
PTPN4-212	ENST00000488896	ERVK-21	P61565	698 aa		6.54	□□□□□ -1.36
PTPN4-212	ENST00000488896	BMT2	Q1RMZ1	405 aa		6.54	□□□□□ -1.36
PTPN4-212	ENST00000488896	RNF187	Q5TA31	235 aa	Predicted RBP	6.54	□□□□□ -1.36
PTPN4-212	ENST00000488896	GDF7	Q7Z4P5	450 aa		6.54	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 22 ms