RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 XPAP23025 273 aaPredicted RBP5.09□□□□□ -1.59
SMC4-220ENST00000488017 CD40P25942 277 aa5.09□□□□□ -1.59
SMC4-220ENST00000488017 RESTQ13127 1097 aa5.09□□□□□ -1.59
SMC4-220ENST00000488017 ZNF169Q14929 603 aaPredicted RBP5.09□□□□□ -1.59
SMC4-220ENST00000488017 FNDC3BQ53EP0 1204 aaKnown RBP5.09□□□□□ -1.59
SMC4-220ENST00000488017 FAM102AQ5T9C2 384 aaPredicted RBP5.09□□□□□ -1.59
SMC4-220ENST00000488017 KIAA1586Q9HCI6 787 aa5.09□□□□□ -1.59
SMC4-220ENST00000488017 RNF7Q9UBF6 113 aa5.09□□□□□ -1.59
SMC4-220ENST00000488017 ST20-MTHFSA0A0A6YYL1 179 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 DNAJC9-AS1A6NH13 148 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 TBKBP1A7MCY6 615 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 ELL2O00472 640 aaPredicted RBP5.08□□□□□ -1.6
SMC4-220ENST00000488017 IKBKBO14920 756 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 OPA1O60313 960 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 CDKL5O76039 1030 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 CFIP05156 583 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 CLEC2LP0C7M8 214 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 ATP2B1P20020 1258 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 FDXRP22570 491 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 FLT3P36888 993 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 NRG3P56975 720 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 LRRC32Q14392 662 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 C2orf27AQ580R0 203 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 PIK3R6Q5UE93 754 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 ESPNLQ6ZVH7 1005 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 SLC44A3Q8N4M1 653 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 CDC5LQ99459 802 aaKnown RBP5.08□□□□□ -1.6
SMC4-220ENST00000488017 FDXACB1Q9BRP7 624 aaPredicted RBP5.08□□□□□ -1.6
SMC4-220ENST00000488017 ZMAT4Q9H898 229 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 KMT5AQ9NQR1 393 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 POGKQ9P215 609 aa5.08□□□□□ -1.6
SMC4-220ENST00000488017 PROP1O75360 226 aa5.07□□□□□ -1.6
SMC4-220ENST00000488017 PFKMP08237 780 aa5.07□□□□□ -1.6
SMC4-220ENST00000488017 RARRES1P49788 294 aa5.07□□□□□ -1.6
SMC4-220ENST00000488017 SIM1P81133 766 aaPredicted RBP5.07□□□□□ -1.6
SMC4-220ENST00000488017 SCAPQ12770 1279 aa5.07□□□□□ -1.6
SMC4-220ENST00000488017 BMT2Q1RMZ1 405 aa5.07□□□□□ -1.6
SMC4-220ENST00000488017 METRNLQ641Q3 311 aa5.07□□□□□ -1.6
SMC4-220ENST00000488017 LMBR1LQ6UX01 489 aa5.07□□□□□ -1.6
SMC4-220ENST00000488017 UBE2R2Q712K3 238 aaPredicted RBP5.07□□□□□ -1.6
SMC4-220ENST00000488017 C1QL2Q7Z5L3 287 aa5.07□□□□□ -1.6
SMC4-220ENST00000488017 ZNF384Q8TF68 577 aa5.07□□□□□ -1.6
SMC4-220ENST00000488017 GAB3Q8WWW8 586 aa5.07□□□□□ -1.6
SMC4-220ENST00000488017 TFAP2CQ92754 450 aa5.07□□□□□ -1.6
SMC4-220ENST00000488017 C1QTNF7Q9BXJ2 289 aa5.07□□□□□ -1.6
SMC4-220ENST00000488017 OXSMQ9NWU1 459 aa5.07□□□□□ -1.6
SMC4-220ENST00000488017 MAP3K2Q9Y2U5 619 aa5.07□□□□□ -1.6
SMC4-220ENST00000488017 USP15Q9Y4E8 981 aaPredicted RBP5.07□□□□□ -1.6
SMC4-220ENST00000488017 PTCH2Q9Y6C5 1203 aa5.07□□□□□ -1.6
SMC4-220ENST00000488017 SALL3Q9BXA9 1300 aa5.06□□□□□ -1.6
SMC4-220ENST00000488017 DNAJC8O75937 253 aaPredicted RBP5.06□□□□□ -1.6
SMC4-220ENST00000488017 C1QL1O75973 258 aa5.06□□□□□ -1.6
SMC4-220ENST00000488017 RAPGEF3O95398 923 aa5.06□□□□□ -1.6
SMC4-220ENST00000488017 CACNA2D1P54289 1103 aa5.06□□□□□ -1.6
SMC4-220ENST00000488017 LCE1EQ5T753 118 aa5.06□□□□□ -1.6
SMC4-220ENST00000488017 ANKS6Q68DC2 871 aa5.06□□□□□ -1.6
SMC4-220ENST00000488017 ZFP28Q8NHY6 868 aa5.06□□□□□ -1.6
SMC4-220ENST00000488017 MKL1Q969V6 931 aa5.06□□□□□ -1.6
SMC4-220ENST00000488017 FERMT2Q96AC1 680 aa5.06□□□□□ -1.6
SMC4-220ENST00000488017 FUBP1Q96AE4 644 aaKnown RBP5.06□□□□□ -1.6
SMC4-220ENST00000488017 CLUHP3Q96NS8 147 aa5.06□□□□□ -1.6
SMC4-220ENST00000488017 USP18Q9UMW8 372 aa5.06□□□□□ -1.6
SMC4-220ENST00000488017 LTA4HP09960 611 aaKnown RBP5.05□□□□□ -1.6
SMC4-220ENST00000488017 ABCG1P45844 678 aa5.05□□□□□ -1.6
SMC4-220ENST00000488017 MEF2AQ02078 507 aaPredicted RBP5.05□□□□□ -1.6
SMC4-220ENST00000488017 MGAT5Q09328 741 aa5.05□□□□□ -1.6
SMC4-220ENST00000488017 ZNF460Q14592 562 aa5.05□□□□□ -1.6
SMC4-220ENST00000488017 UBE3CQ15386 1083 aa5.05□□□□□ -1.6
SMC4-220ENST00000488017 SPDYE7PQ495Y7 208 aa5.05□□□□□ -1.6
SMC4-220ENST00000488017 C19orf54Q5BKX5 351 aa5.05□□□□□ -1.6
SMC4-220ENST00000488017 Q6ZNX1 250 aa5.05□□□□□ -1.6
SMC4-220ENST00000488017 PASD1Q8IV76 773 aa5.05□□□□□ -1.6
SMC4-220ENST00000488017 GLB1L2Q8IW92 636 aa5.05□□□□□ -1.6
SMC4-220ENST00000488017 ARMC5Q96C12 935 aa5.05□□□□□ -1.6
SMC4-220ENST00000488017 Q96MF0 132 aa5.05□□□□□ -1.6
SMC4-220ENST00000488017 ORAI3Q9BRQ5 295 aa5.05□□□□□ -1.6
SMC4-220ENST00000488017 SLC29A3Q9BZD2 475 aa5.05□□□□□ -1.6
SMC4-220ENST00000488017 ATP11BQ9Y2G3 1177 aa5.05□□□□□ -1.6
SMC4-220ENST00000488017 ZMYM3Q14202 1370 aa5.04□□□□□ -1.6
SMC4-220ENST00000488017 ZBTB41Q5SVQ8 909 aa5.04□□□□□ -1.6
SMC4-220ENST00000488017 AGAP9Q5VTM2 703 aa5.04□□□□□ -1.6
SMC4-220ENST00000488017 CDCA2Q69YH5 1023 aaPredicted RBP5.04□□□□□ -1.6
SMC4-220ENST00000488017 GPR149Q86SP6 731 aa5.04□□□□□ -1.6
SMC4-220ENST00000488017 ARHGEF25Q86VW2 580 aa5.04□□□□□ -1.6
SMC4-220ENST00000488017 EFHBQ8N7U6 833 aa5.04□□□□□ -1.6
SMC4-220ENST00000488017 Q8N9P0 234 aaPredicted RBP5.04□□□□□ -1.6
SMC4-220ENST00000488017 RSAD2Q8WXG1 361 aa5.04□□□□□ -1.6
SMC4-220ENST00000488017 SRPK1Q96SB4 655 aaKnown RBP5.04□□□□□ -1.6
SMC4-220ENST00000488017 NEU1Q99519 415 aa5.04□□□□□ -1.6
SMC4-220ENST00000488017 TANGO6Q9C0B7 1094 aa5.04□□□□□ -1.6
SMC4-220ENST00000488017 ZKSCAN5Q9Y2L8 839 aa5.04□□□□□ -1.6
SMC4-220ENST00000488017 GASTP01350 101 aa5.03□□□□□ -1.6
SMC4-220ENST00000488017 JMJD7P0C870 316 aa5.03□□□□□ -1.6
SMC4-220ENST00000488017 ATP2A2P16615 1042 aaKnown RBP5.03□□□□□ -1.6
SMC4-220ENST00000488017 GPR162Q16538 588 aa5.03□□□□□ -1.6
SMC4-220ENST00000488017 PDZD4Q76G19 769 aaPredicted RBP5.03□□□□□ -1.6
SMC4-220ENST00000488017 RHOT2Q8IXI1 618 aa5.03□□□□□ -1.6
SMC4-220ENST00000488017 RNF169Q8NCN4 708 aa5.03□□□□□ -1.6
SMC4-220ENST00000488017 PDLIM2Q96JY6 352 aa5.03□□□□□ -1.6
SMC4-220ENST00000488017 FOXJ2Q9P0K8 574 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms