RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-215	ENST00000487401	SIGLEC14	Q08ET2	396 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	PRPF4B	Q13523	1007 aa	Known RBP	13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	PDIA5	Q14554	519 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	NBR1	Q14596	966 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	PPP2R5A	Q15172	486 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	RABEP1	Q15276	862 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	MAPK6	Q16659	721 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	FAM187B	Q17R55	369 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	CDCA2	Q69YH5	1023 aa	Predicted RBP	13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	ELMSAN1	Q6PJG2	1045 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	TMC5	Q6UXY8	1006 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	TAS1R1	Q7RTX1	841 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	BMP8A	Q7Z5Y6	402 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	SUGP1	Q8IWZ8	645 aa	Known RBP	13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	C4orf32	Q8N8J7	132 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	TDRD5	Q8NAT2	981 aa	Known RBP	13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	RPS6KC1	Q96S38	1066 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	SFXN1	Q9H9B4	322 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	MARCH5	Q9NX47	278 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	DPP7	Q9UHL4	492 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	KIAA1024	Q9UPX6	916 aa		13.76	□□□□□ -0.21
SREBF1-215	ENST00000487401	EVPL	Q92817	2033 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	C2CD4D	B7Z1M9	353 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	ACKR2	O00590	384 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	TADA2A	O75478	443 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	PRKCB	P05771	671 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	ADH1A	P07327	375 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	U2AF2	P26368	475 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	NAMPT	P43490	491 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	GLUD2	P49448	558 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	CLCN4	P51793	760 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	GRIK3	Q13003	919 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	PTGDR	Q13258	359 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	MCTP1	Q6DN14	999 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	KREMEN2	Q8NCW0	462 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	KIFAP3	Q92845	792 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	ADPGK	Q9BRR6	497 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	BHMT2	Q9H2M3	363 aa		13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	UPF2	Q9HAU5	1272 aa	Known RBP	13.75	□□□□□ -0.21
SREBF1-215	ENST00000487401	MYH9	P35579	1960 aa	Known RBP	13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	EFNA5	P52803	228 aa		13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	ECM1	Q16610	540 aa		13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	KIAA0319	Q5VV43	1072 aa		13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	KRT79	Q5XKE5	535 aa		13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	GPR149	Q86SP6	731 aa		13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	PLCD3	Q8N3E9	789 aa		13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	SNX29	Q8TEQ0	813 aa		13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	BSND	Q8WZ55	320 aa		13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	ACSF2	Q96CM8	615 aa	Predicted RBP	13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	PDZD7	Q9H5P4	517 aa		13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	RXFP1	Q9HBX9	757 aa		13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	POLD4	Q9HCU8	107 aa		13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	DDX19A	Q9NUU7	478 aa	Known RBP	13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	SNTG2	Q9NY99	539 aa		13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	DNM3	Q9UQ16	869 aa		13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	PCDHB6	Q9Y5E3	794 aa		13.74	□□□□□ -0.21
SREBF1-215	ENST00000487401	ZMYM2	Q9UBW7	1377 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401		F8W810	466 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	LAD1	O00515	517 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	TEX28	O15482	410 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	GLUD1	P00367	558 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	TOB1	P50616	345 aa	Predicted RBP	13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	DSG1	Q02413	1049 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	MTMR3	Q13615	1198 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	USP41	Q3LFD5	358 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	FUT10	Q6P4F1	479 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	DTHD1	Q6ZMT9	781 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	OTOP3	Q7RTS5	596 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	UBALD2	Q8IYN6	164 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	ZDHHC14	Q8IZN3	488 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	FBXL6	Q8N531	539 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	GSTCD	Q8NEC7	633 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	RABGGTA	Q92696	567 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	KIFC3	Q9BVG8	833 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	MAN1C1	Q9NR34	630 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	DAXX	Q9UER7	740 aa	Predicted RBP	13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	LIMD1	Q9UGP4	676 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	ADAM28	Q9UKQ2	775 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	UST	Q9Y2C2	406 aa		13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	13.73	□□□□□ -0.21
SREBF1-215	ENST00000487401	TTLL13P	A6NNM8	815 aa		13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	CCDC169	A6NNP5	214 aa		13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401		H3BQV1	296 aa		13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401		K7ERI5	159 aa		13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	TH	P07101	528 aa		13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	HOXD11	P31277	338 aa	Predicted RBP	13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	CREM	Q03060	361 aa		13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	TUSC3	Q13454	348 aa		13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	HSP90AA2P	Q14568	343 aa	Predicted RBP	13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	DCAF4L1	Q3SXM0	396 aa		13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	CCDC149	Q6ZUS6	474 aa		13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	PALB2	Q86YC2	1186 aa		13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	RNF168	Q8IYW5	571 aa	Predicted RBP	13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	IGSF22	Q8N9C0	903 aa		13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	CMAS	Q8NFW8	434 aa	Predicted RBP	13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	RIN2	Q8WYP3	895 aa	Predicted RBP	13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	GPR62	Q9BZJ7	368 aa		13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	CCDC113	Q9H0I3	377 aa		13.72	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms