RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 SLFN14P0C7P3 912 aa17.44■□□□□ 0.38
UPF3A-208ENST00000484246 MCF2P10911 925 aa17.44■□□□□ 0.38
UPF3A-208ENST00000484246 PPM1AP35813 382 aa17.44■□□□□ 0.38
UPF3A-208ENST00000484246 UBE3AQ05086 875 aa17.44■□□□□ 0.38
UPF3A-208ENST00000484246 ALCAMQ13740 583 aa17.44■□□□□ 0.38
UPF3A-208ENST00000484246 MPZL3Q6UWV2 235 aa17.44■□□□□ 0.38
UPF3A-208ENST00000484246 CDR2LQ86X02 465 aaPredicted RBP17.44■□□□□ 0.38
UPF3A-208ENST00000484246 COLGALT1Q8NBJ5 622 aa17.44■□□□□ 0.38
UPF3A-208ENST00000484246 TARS2Q9BW92 718 aaKnown RBP17.44■□□□□ 0.38
UPF3A-208ENST00000484246 CDT1Q9H211 546 aa17.44■□□□□ 0.38
UPF3A-208ENST00000484246 HCSTQ9UBK5 93 aa17.44■□□□□ 0.38
UPF3A-208ENST00000484246 TBX20Q9UMR3 447 aa17.44■□□□□ 0.38
UPF3A-208ENST00000484246 HES2Q9Y543 173 aa17.44■□□□□ 0.38
UPF3A-208ENST00000484246 PCDHB12Q9Y5F1 795 aa17.44■□□□□ 0.38
UPF3A-208ENST00000484246 COL4A4P53420 1690 aaPredicted RBP17.44■□□□□ 0.38
UPF3A-208ENST00000484246 RFXAPO00287 272 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 LIG1P18858 919 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 GRM5P41594 1212 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 GPM6BQ13491 265 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 PTPROQ16827 1216 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 TMEM132AQ24JP5 1023 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 ZNF568Q3ZCX4 644 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 ZNF720Q7Z2F6 126 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 CCDC65Q8IXS2 484 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 GSTCDQ8NEC7 633 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 MRPS27Q92552 414 aaKnown RBP17.43■□□□□ 0.38
UPF3A-208ENST00000484246 MRPL38Q96DV4 380 aaKnown RBP17.43■□□□□ 0.38
UPF3A-208ENST00000484246 ZNF558Q96NG5 402 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 ZHX3Q9H4I2 956 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 CHMP5Q9NZZ3 219 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 PLAGL2Q9UPG8 496 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 LZTS1Q9Y250 596 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 USP20Q9Y2K6 914 aa17.43■□□□□ 0.38
UPF3A-208ENST00000484246 ARL5CA6NH57 179 aa17.42■□□□□ 0.38
UPF3A-208ENST00000484246 RECQL4O94761 1208 aa17.42■□□□□ 0.38
UPF3A-208ENST00000484246 MYL1P05976 194 aa17.42■□□□□ 0.38
UPF3A-208ENST00000484246 MLH1P40692 756 aa17.42■□□□□ 0.38
UPF3A-208ENST00000484246 PLCB3Q01970 1234 aa17.42■□□□□ 0.38
UPF3A-208ENST00000484246 MCL1Q07820 350 aa17.42■□□□□ 0.38
UPF3A-208ENST00000484246 EHHADHQ08426 723 aa17.42■□□□□ 0.38
UPF3A-208ENST00000484246 DSC1Q08554 894 aa17.42■□□□□ 0.38
UPF3A-208ENST00000484246 KCNT2Q6UVM3 1135 aa17.42■□□□□ 0.38
UPF3A-208ENST00000484246 SLC39A11Q8N1S5 342 aa17.42■□□□□ 0.38
UPF3A-208ENST00000484246 KLHL23Q8NBE8 558 aa17.42■□□□□ 0.38
UPF3A-208ENST00000484246 MAFAQ8NHW3 353 aaPredicted RBP17.42■□□□□ 0.38
UPF3A-208ENST00000484246 GAD1Q99259 594 aa17.42■□□□□ 0.38
UPF3A-208ENST00000484246 TMEM175Q9BSA9 504 aa17.42■□□□□ 0.38
UPF3A-208ENST00000484246 GDPD2Q9HCC8 539 aa17.42■□□□□ 0.38
UPF3A-208ENST00000484246 INPP5FQ9Y2H2 1132 aa17.42■□□□□ 0.38
UPF3A-208ENST00000484246 FNDC1Q4ZHG4 1894 aaPredicted RBP17.41■□□□□ 0.38
UPF3A-208ENST00000484246 A0A1B0GVL5 298 aa17.41■□□□□ 0.38
UPF3A-208ENST00000484246 ITGB1P05556 798 aa17.41■□□□□ 0.38
UPF3A-208ENST00000484246 IDEP14735 1019 aa17.41■□□□□ 0.38
UPF3A-208ENST00000484246 NMT1P30419 496 aaKnown RBP17.41■□□□□ 0.38
UPF3A-208ENST00000484246 SYKP43405 635 aa17.41■□□□□ 0.38
UPF3A-208ENST00000484246 AFF1P51825 1210 aaKnown RBP17.41■□□□□ 0.38
UPF3A-208ENST00000484246 GRIK3Q13003 919 aa17.41■□□□□ 0.38
UPF3A-208ENST00000484246 COASYQ13057 564 aa17.41■□□□□ 0.38
UPF3A-208ENST00000484246 NOLC1Q14978 699 aaKnown RBP eCLIP17.41■□□□□ 0.38
UPF3A-208ENST00000484246 LONRF3Q496Y0 759 aa17.41■□□□□ 0.38
UPF3A-208ENST00000484246 TIGD5Q53EQ6 642 aa17.41■□□□□ 0.38
UPF3A-208ENST00000484246 CEP57L1Q8IYX8 460 aa17.41■□□□□ 0.38
UPF3A-208ENST00000484246 FSIP1Q8NA03 581 aa17.41■□□□□ 0.38
UPF3A-208ENST00000484246 SPPL3Q8TCT6 385 aa17.41■□□□□ 0.38
UPF3A-208ENST00000484246 ZFP42Q96MM3 310 aa17.41■□□□□ 0.38
UPF3A-208ENST00000484246 NRDE2Q9H7Z3 1164 aa17.41■□□□□ 0.38
UPF3A-208ENST00000484246 PANK4Q9NVE7 773 aa17.41■□□□□ 0.38
UPF3A-208ENST00000484246 CUL9Q8IWT3 2517 aa17.41■□□□□ 0.38
UPF3A-208ENST00000484246 PVALEFA0A1B0GWK0 134 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 HNRNPDLO14979 420 aaKnown RBP17.4■□□□□ 0.38
UPF3A-208ENST00000484246 GRM6O15303 877 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 B4GALT3O60512 393 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 FGF18O76093 207 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 IGFBP4P22692 258 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 AKAP5P24588 427 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 NDUFA8P51970 172 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 BCAR1P56945 870 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 CAMK1Q14012 370 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 XKR4Q5GH76 650 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 HERC4Q5GLZ8 1057 aaPredicted RBP17.4■□□□□ 0.38
UPF3A-208ENST00000484246 SPOUT1Q5T280 376 aaKnown RBP17.4■□□□□ 0.38
UPF3A-208ENST00000484246 UNC13DQ70J99 1090 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 STAMQ92783 540 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 MRPL44Q9H9J2 332 aaKnown RBP17.4■□□□□ 0.38
UPF3A-208ENST00000484246 SNTG2Q9NY99 539 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 SPG21Q9NZD8 308 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 SERTAD1Q9UHV2 236 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 STYXL1Q9Y6J8 313 aa17.4■□□□□ 0.38
UPF3A-208ENST00000484246 PTGESO14684 152 aa17.39■□□□□ 0.37
UPF3A-208ENST00000484246 CLDN3O15551 220 aa17.39■□□□□ 0.37
UPF3A-208ENST00000484246 FAM189A1O60320 539 aa17.39■□□□□ 0.37
UPF3A-208ENST00000484246 GALTP07902 379 aa17.39■□□□□ 0.37
UPF3A-208ENST00000484246 ALDH7A1P49419 539 aaKnown RBP17.39■□□□□ 0.37
UPF3A-208ENST00000484246 LIG4P49917 911 aa17.39■□□□□ 0.37
UPF3A-208ENST00000484246 SCNN1GP51170 649 aa17.39■□□□□ 0.37
UPF3A-208ENST00000484246 ASIC1P78348 528 aa17.39■□□□□ 0.37
UPF3A-208ENST00000484246 RNASELQ05823 741 aaKnown RBP17.39■□□□□ 0.37
UPF3A-208ENST00000484246 KYAT1Q16773 422 aa17.39■□□□□ 0.37
UPF3A-208ENST00000484246 L1TD1Q5T7N2 865 aaKnown RBP17.39■□□□□ 0.37
UPF3A-208ENST00000484246 SLC39A4Q6P5W5 647 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms