RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 IPO13O94829 963 aaKnown RBP7.96□□□□□ -1.14
USP40-213ENST00000483216 PDGFRBP09619 1106 aa7.96□□□□□ -1.14
USP40-213ENST00000483216 GNAT2P19087 354 aa7.96□□□□□ -1.14
USP40-213ENST00000483216 PNMA8AQ86V59 439 aaPredicted RBP7.96□□□□□ -1.14
USP40-213ENST00000483216 PALM2Q8IXS6 379 aa7.96□□□□□ -1.14
USP40-213ENST00000483216 THEMISQ8N1K5 641 aaPredicted RBP7.96□□□□□ -1.14
USP40-213ENST00000483216 MDGA1Q8NFP4 955 aa7.96□□□□□ -1.14
USP40-213ENST00000483216 ST8SIA2Q92186 375 aa7.96□□□□□ -1.14
USP40-213ENST00000483216 TUBD1Q9UJT1 453 aa7.96□□□□□ -1.14
USP40-213ENST00000483216 FAM171A2A8MVW0 826 aa7.95□□□□□ -1.14
USP40-213ENST00000483216 ENDOD1O94919 500 aa7.95□□□□□ -1.14
USP40-213ENST00000483216 C5AR1P21730 350 aa7.95□□□□□ -1.14
USP40-213ENST00000483216 KRTAP10-2P60368 255 aa7.95□□□□□ -1.14
USP40-213ENST00000483216 NOMO1Q15155 1222 aa7.95□□□□□ -1.14
USP40-213ENST00000483216 FAM214AQ32MH5 1076 aa7.95□□□□□ -1.14
USP40-213ENST00000483216 DOK3Q7L591 496 aa7.95□□□□□ -1.14
USP40-213ENST00000483216 FAM83AQ86UY5 434 aa7.95□□□□□ -1.14
USP40-213ENST00000483216 GSPT2Q8IYD1 628 aaKnown RBP7.95□□□□□ -1.14
USP40-213ENST00000483216 ELOA2Q8IYF1 753 aaPredicted RBP7.95□□□□□ -1.14
USP40-213ENST00000483216 TEKT5Q96M29 485 aa7.95□□□□□ -1.14
USP40-213ENST00000483216 GPR20Q99678 358 aa7.95□□□□□ -1.14
USP40-213ENST00000483216 EPC1Q9H2F5 836 aa7.95□□□□□ -1.14
USP40-213ENST00000483216 DNM3Q9UQ16 869 aa7.95□□□□□ -1.14
USP40-213ENST00000483216 GIT1Q9Y2X7 761 aa7.95□□□□□ -1.14
USP40-213ENST00000483216 KRTAP23-1A1A580 65 aa7.94□□□□□ -1.14
USP40-213ENST00000483216 CCND1P24385 295 aa7.94□□□□□ -1.14
USP40-213ENST00000483216 ACRV1P26436 265 aa7.94□□□□□ -1.14
USP40-213ENST00000483216 SREBF1P36956 1147 aa7.94□□□□□ -1.14
USP40-213ENST00000483216 METTL24Q5JXM2 366 aa7.94□□□□□ -1.14
USP40-213ENST00000483216 EFCAB2Q5VUJ9 269 aa7.94□□□□□ -1.14
USP40-213ENST00000483216 HTR3DQ70Z44 454 aa7.94□□□□□ -1.14
USP40-213ENST00000483216 PPM1NQ8N819 430 aa7.94□□□□□ -1.14
USP40-213ENST00000483216 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.94□□□□□ -1.14
USP40-213ENST00000483216 MDM1Q8TC05 714 aa7.94□□□□□ -1.14
USP40-213ENST00000483216 AURKAIP1Q9NWT8 199 aaPredicted RBP7.94□□□□□ -1.14
USP40-213ENST00000483216 ZMYM3Q14202 1370 aa7.94□□□□□ -1.14
USP40-213ENST00000483216 ADCY6O43306 1168 aa7.93□□□□□ -1.14
USP40-213ENST00000483216 RECQLP46063 649 aaPredicted RBP7.93□□□□□ -1.14
USP40-213ENST00000483216 RABGGTBP53611 331 aa7.93□□□□□ -1.14
USP40-213ENST00000483216 SLC16A1P53985 500 aa7.93□□□□□ -1.14
USP40-213ENST00000483216 ODF1Q14990 250 aa7.93□□□□□ -1.14
USP40-213ENST00000483216 SEPT2Q15019 361 aa7.93□□□□□ -1.14
USP40-213ENST00000483216 DCAF17Q5H9S7 520 aaPredicted RBP7.93□□□□□ -1.14
USP40-213ENST00000483216 PRAMEF14Q5SWL7 426 aa7.93□□□□□ -1.14
USP40-213ENST00000483216 TRMT2AQ8IZ69 625 aaKnown RBP7.93□□□□□ -1.14
USP40-213ENST00000483216 NRG4Q8WWG1 115 aa7.93□□□□□ -1.14
USP40-213ENST00000483216 CHMP4CQ96CF2 233 aa7.93□□□□□ -1.14
USP40-213ENST00000483216 CPPED1Q9BRF8 314 aaPredicted RBP7.93□□□□□ -1.14
USP40-213ENST00000483216 SAP30BPQ9UHR5 308 aaKnown RBP7.93□□□□□ -1.14
USP40-213ENST00000483216 FLT3LGP49771 235 aa7.92□□□□□ -1.14
USP40-213ENST00000483216 NEK2P51955 445 aa7.92□□□□□ -1.14
USP40-213ENST00000483216 PER3P56645 1201 aa7.92□□□□□ -1.14
USP40-213ENST00000483216 FAM47AQ5JRC9 791 aa7.92□□□□□ -1.14
USP40-213ENST00000483216 SPDYAQ5MJ70 313 aa7.92□□□□□ -1.14
USP40-213ENST00000483216 NAIF1Q69YI7 327 aaPredicted RBP7.92□□□□□ -1.14
USP40-213ENST00000483216 GPRIN1Q7Z2K8 1008 aa7.92□□□□□ -1.14
USP40-213ENST00000483216 ZNF572Q7Z3I7 529 aaPredicted RBP7.92□□□□□ -1.14
USP40-213ENST00000483216 PQLC1Q8N2U9 271 aa7.92□□□□□ -1.14
USP40-213ENST00000483216 OR2I1PQ8NGU4 316 aa7.92□□□□□ -1.14
USP40-213ENST00000483216 ATXN2LQ8WWM7 1075 aaKnown RBP7.92□□□□□ -1.14
USP40-213ENST00000483216 CYFIP2Q96F07 1278 aa7.92□□□□□ -1.14
USP40-213ENST00000483216 CEP89Q96ST8 783 aa7.92□□□□□ -1.14
USP40-213ENST00000483216 UHRF1Q96T88 793 aaPredicted RBP7.92□□□□□ -1.14
USP40-213ENST00000483216 LSM14BQ9BX40 385 aaKnown RBP7.92□□□□□ -1.14
USP40-213ENST00000483216 CLCA2Q9UQC9 943 aa7.92□□□□□ -1.14
USP40-213ENST00000483216 B5MCH6 92 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 SNUPNO95149 360 aaKnown RBP7.91□□□□□ -1.14
USP40-213ENST00000483216 HSP90B1P14625 803 aaKnown RBP7.91□□□□□ -1.14
USP40-213ENST00000483216 GUCY1A2P33402 732 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 PTPN7P35236 360 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 SLC6A9P48067 706 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 ADKP55263 362 aaKnown RBP7.91□□□□□ -1.14
USP40-213ENST00000483216 SP140Q13342 867 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 MFSD14BQ5SR56 506 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 C1QL3Q5VWW1 255 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 Q6ZRM9 215 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 ZBTB46Q86UZ6 589 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 REPS2Q8NFH8 660 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 OR52N2Q8NGI0 321 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 CEP95Q96GE4 821 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 LANCL2Q9NS86 450 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 INTUQ9ULD6 942 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 HDAC5Q9UQL6 1122 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 MYRFQ9Y2G1 1151 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 SIK3Q9Y2K2 1263 aa7.91□□□□□ -1.14
USP40-213ENST00000483216 ATRNL1Q5VV63 1379 aa7.9□□□□□ -1.14
USP40-213ENST00000483216 KLRG2A4D1S0 409 aaPredicted RBP7.9□□□□□ -1.14
USP40-213ENST00000483216 GOLGA6L6A8MZA4 724 aa7.9□□□□□ -1.14
USP40-213ENST00000483216 PLSCR1O15162 318 aa7.9□□□□□ -1.14
USP40-213ENST00000483216 ALDH1L1O75891 902 aa7.9□□□□□ -1.14
USP40-213ENST00000483216 IL2RBP14784 551 aa7.9□□□□□ -1.14
USP40-213ENST00000483216 MAN2A2P49641 1150 aa7.9□□□□□ -1.14
USP40-213ENST00000483216 SCNN1GP51170 649 aa7.9□□□□□ -1.14
USP40-213ENST00000483216 RRP1BQ14684 758 aaKnown RBP7.9□□□□□ -1.14
USP40-213ENST00000483216 TMEM240Q5SV17 173 aa7.9□□□□□ -1.14
USP40-213ENST00000483216 MB21D1Q8N884 522 aa7.9□□□□□ -1.14
USP40-213ENST00000483216 SH3RF3Q8TEJ3 882 aaPredicted RBP7.9□□□□□ -1.14
USP40-213ENST00000483216 DPF2Q92785 391 aa7.9□□□□□ -1.14
USP40-213ENST00000483216 COA7Q96BR5 231 aa7.9□□□□□ -1.14
USP40-213ENST00000483216 MNTQ99583 582 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms