RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 FILIP1Q7Z7B0 1213 aa14.32□□□□□ -0.12
CHD3-210ENST00000479080 RTN4RL1Q86UN2 441 aaPredicted RBP14.32□□□□□ -0.12
CHD3-210ENST00000479080 FAM84AQ96KN4 292 aa14.32□□□□□ -0.12
CHD3-210ENST00000479080 CNOT6LQ96LI5 555 aaKnown RBP14.32□□□□□ -0.12
CHD3-210ENST00000479080 CEP63Q96MT8 703 aa14.32□□□□□ -0.12
CHD3-210ENST00000479080 CXCL16Q9H2A7 254 aa14.32□□□□□ -0.12
CHD3-210ENST00000479080 CGNQ9P2M7 1197 aaKnown RBP14.32□□□□□ -0.12
CHD3-210ENST00000479080 SQORQ9Y6N5 450 aa14.32□□□□□ -0.12
CHD3-210ENST00000479080 SMTNL1A8MU46 457 aa14.31□□□□□ -0.12
CHD3-210ENST00000479080 NPTXRO95502 500 aa14.31□□□□□ -0.12
CHD3-210ENST00000479080 CXCL10P02778 98 aa14.31□□□□□ -0.12
CHD3-210ENST00000479080 HARSP12081 509 aaKnown RBP14.31□□□□□ -0.12
CHD3-210ENST00000479080 MARSP56192 900 aaKnown RBP14.31□□□□□ -0.12
CHD3-210ENST00000479080 NOLC1Q14978 699 aaKnown RBP eCLIP14.31□□□□□ -0.12
CHD3-210ENST00000479080 PCBP1Q15365 356 aaKnown RBP eCLIP14.31□□□□□ -0.12
CHD3-210ENST00000479080 ZNF568Q3ZCX4 644 aa14.31□□□□□ -0.12
CHD3-210ENST00000479080 CCDC155Q8N6L0 562 aa14.31□□□□□ -0.12
CHD3-210ENST00000479080 GOLGA5Q8TBA6 731 aa14.31□□□□□ -0.12
CHD3-210ENST00000479080 POMGNT1Q8WZA1 660 aa14.31□□□□□ -0.12
CHD3-210ENST00000479080 TMEM39AQ9NV64 488 aa14.31□□□□□ -0.12
CHD3-210ENST00000479080 INTS13Q9NVM9 706 aa14.31□□□□□ -0.12
CHD3-210ENST00000479080 AGO2Q9UKV8 859 aaKnown RBP14.31□□□□□ -0.12
CHD3-210ENST00000479080 PIN4Q9Y237 131 aaKnown RBP14.31□□□□□ -0.12
CHD3-210ENST00000479080 SCN5AQ14524 2016 aa14.31□□□□□ -0.12
CHD3-210ENST00000479080 BECN2A8MW95 431 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 KCNJ18B7U540 433 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 N4BP3O15049 544 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 CETN3O15182 167 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 OGTO15294 1046 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 SLC16A3O15427 465 aaKnown RBP14.3□□□□□ -0.12
CHD3-210ENST00000479080 MCF2P10911 925 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 ATF7P17544 494 aaPredicted RBP14.3□□□□□ -0.12
CHD3-210ENST00000479080 AXLP30530 894 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 NFX1Q12986 1120 aaKnown RBP14.3□□□□□ -0.12
CHD3-210ENST00000479080 PAK2Q13177 524 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 KCNJ12Q14500 433 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 GSE1Q14687 1217 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 KRT31Q15323 416 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 PLEKHG4Q58EX7 1191 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 MIIPQ5JXC2 388 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 CEP135Q66GS9 1140 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 TRIM59Q8IWR1 403 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 GPD1LQ8N335 351 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 TMEM130Q8N3G9 435 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 XXYLT1Q8NBI6 393 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 SMG8Q8ND04 991 aaKnown RBP14.3□□□□□ -0.12
CHD3-210ENST00000479080 NOC3LQ8WTT2 800 aaKnown RBP14.3□□□□□ -0.12
CHD3-210ENST00000479080 FAM213AQ9BRX8 229 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 MKNK1Q9BUB5 465 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 MSTO1Q9BUK6 570 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 RNF39Q9H2S5 420 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 NXF3Q9H4D5 531 aaKnown RBP14.3□□□□□ -0.12
CHD3-210ENST00000479080 LIMA1Q9UHB6 759 aaKnown RBP14.3□□□□□ -0.12
CHD3-210ENST00000479080 CPSF3Q9UKF6 684 aaKnown RBP14.3□□□□□ -0.12
CHD3-210ENST00000479080 HES2Q9Y543 173 aa14.3□□□□□ -0.12
CHD3-210ENST00000479080 MEIS3P2A8K0S8 358 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 CLDN3O15551 220 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 EXTL3O43909 919 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 EXOC3O60645 756 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 ACOT2P49753 483 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 DLG4P78352 724 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 ENOX2Q16206 610 aaKnown RBP14.29□□□□□ -0.12
CHD3-210ENST00000479080 TCP11X2Q5H9J9 407 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 SCARA3Q6AZY7 606 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 SLFN12LQ6IEE8 588 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 NOTUMQ6P988 496 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 SLC27A1Q6PCB7 646 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 FAM186BQ8IYM0 893 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 THNSL1Q8IYQ7 743 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 RDH13Q8NBN7 331 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 DBF4BQ8NFT6 615 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 MFSD14AQ96MC6 490 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 GRPEL1Q9HAV7 217 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 TOPORSQ9NS56 1045 aaPredicted RBP14.29□□□□□ -0.12
CHD3-210ENST00000479080 TAB2Q9NYJ8 693 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 PTPRJQ12913 1337 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 LTBP2Q14767 1821 aa14.29□□□□□ -0.12
CHD3-210ENST00000479080 CCDC85CA6NKD9 419 aa14.28□□□□□ -0.12
CHD3-210ENST00000479080 GPR182O15218 404 aa14.28□□□□□ -0.12
CHD3-210ENST00000479080 TIMP1P01033 207 aa14.28□□□□□ -0.12
CHD3-210ENST00000479080 RPL13P26373 211 aaKnown RBP14.28□□□□□ -0.12
CHD3-210ENST00000479080 PSMC2P35998 433 aaKnown RBP14.28□□□□□ -0.12
CHD3-210ENST00000479080 GRM5P41594 1212 aa14.28□□□□□ -0.12
CHD3-210ENST00000479080 OSTNP61366 133 aa14.28□□□□□ -0.12
CHD3-210ENST00000479080 FANCCQ00597 558 aa14.28□□□□□ -0.12
CHD3-210ENST00000479080 CYP24A1Q07973 514 aa14.28□□□□□ -0.12
CHD3-210ENST00000479080 SNRNP35Q16560 246 aaKnown RBP14.28□□□□□ -0.12
CHD3-210ENST00000479080 PTPN21Q16825 1174 aa14.28□□□□□ -0.12
CHD3-210ENST00000479080 TPD52L1Q16890 204 aaPredicted RBP14.28□□□□□ -0.12
CHD3-210ENST00000479080 BRSK2Q8IWQ3 736 aa14.28□□□□□ -0.12
CHD3-210ENST00000479080 C7orf61Q8IZ16 206 aa14.28□□□□□ -0.12
CHD3-210ENST00000479080 USP38Q8NB14 1042 aa14.28□□□□□ -0.12
CHD3-210ENST00000479080 SLC35C1Q96A29 364 aa14.28□□□□□ -0.12
CHD3-210ENST00000479080 CCDC51Q96ER9 411 aa14.28□□□□□ -0.12
CHD3-210ENST00000479080 NAP1L5Q96NT1 182 aaPredicted RBP14.28□□□□□ -0.12
CHD3-210ENST00000479080 IFIH1Q9BYX4 1025 aaKnown RBP14.28□□□□□ -0.12
CHD3-210ENST00000479080 PRDM5Q9NQX1 630 aaPredicted RBP14.28□□□□□ -0.12
CHD3-210ENST00000479080 IPPQ9Y573 584 aa14.28□□□□□ -0.12
CHD3-210ENST00000479080 TET1Q8NFU7 2136 aa14.27□□□□□ -0.12
CHD3-210ENST00000479080 GOLGA6L3A6NEY3 463 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms