RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	MLH1	P40692	756 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	SYK	P43405	635 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	AFF1	P51825	1210 aa	Known RBP	11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	ZNF568	Q3ZCX4	644 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	EPC2	Q52LR7	807 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	HERC4	Q5GLZ8	1057 aa	Predicted RBP	11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	GLB1L	Q6UWU2	654 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	LRRC55	Q6ZSA7	311 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	MRPL10	Q7Z7H8	261 aa	Known RBP	11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	ZBTB33	Q86T24	672 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	TMEM192	Q8IY95	271 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	LRRC43	Q8N309	656 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	HPS3	Q969F9	1004 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	PGBD4	Q96DM1	585 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	BICD1	Q96G01	975 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	IPO9	Q96P70	1041 aa	Known RBP	11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	ADPGK	Q9BRR6	497 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	FGFBP2	Q9BYJ0	223 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	RSAD1	Q9HA92	442 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	TYW1	Q9NV66	732 aa	Known RBP	11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	PANK4	Q9NVE7	773 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	ANKFY1	Q9P2R3	1169 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	PTPRS	Q13332	1948 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	CDH23	Q9H251	3354 aa		11.28	□□□□□ -0.6
HDAC6-222	ENST00000478095	GOLGA6L4	A6NEF3	574 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095		H0YCG3	227 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	OFD1	O75665	1012 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	SLFN14	P0C7P3	912 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	MYB	P10242	640 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	FOSL2	P15408	326 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	GAP43	P17677	238 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	IGFBP4	P22692	258 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	CASP5	P51878	434 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	AMPD3	Q01432	767 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	COASY	Q13057	564 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	CUL4B	Q13620	913 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	ADGRE1	Q14246	886 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	NOMO2	Q5JPE7	1267 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	LCE2D	Q5TA82	110 aa	Predicted RBP	11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	CCDC65	Q8IXS2	484 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	CEP120	Q8N960	986 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	CLP1	Q92989	425 aa	Known RBP	11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	ZBTB45	Q96K62	511 aa	Predicted RBP	11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	ZFP42	Q96MM3	310 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	GAD1	Q99259	594 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	ACO2	Q99798	780 aa	Known RBP	11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	PYM1	Q9BRP8	204 aa	Known RBP	11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	TCHP	Q9BT92	498 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	LRRC27	Q9C0I9	530 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	GBP3	Q9H0R5	595 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	CDT1	Q9H211	546 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	IKZF4	Q9H2S9	585 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	CWH43	Q9H720	699 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	MRPL44	Q9H9J2	332 aa	Known RBP	11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	MAGEF1	Q9HAY2	307 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	SNTG2	Q9NY99	539 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	KLK14	Q9P0G3	267 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	PARP2	Q9UGN5	583 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	KCNG1	Q9UIX4	513 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	TBX20	Q9UMR3	447 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	TNFSF13B	Q9Y275	285 aa		11.27	□□□□□ -0.61
HDAC6-222	ENST00000478095	CHD9	Q3L8U1	2897 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	FAM237A	A0A1B0GTK4	181 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	FRMD3	A2A2Y4	597 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	ARL5C	A6NH57	179 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	GCNT3	O95395	438 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	POMC	P01189	267 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	BMPR1A	P36894	532 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	MATR3	P43243	847 aa	Known RBP eCLIP	11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	LIG4	P49917	911 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	SCNN1G	P51170	649 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	OSTN	P61366	133 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	DCAF4L1	Q3SXM0	396 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	SEZ6	Q53EL9	994 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	MPZL3	Q6UWV2	235 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	ZNF720	Q7Z2F6	126 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	HACE1	Q8IYU2	909 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	CNNM3	Q8NE01	707 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	GLIS3	Q8NEA6	775 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	PAGE5	Q96GU1	130 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	GAS2L1	Q99501	681 aa	Predicted RBP	11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	C7orf25	Q9BPX7	421 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	MRPL9	Q9BYD2	267 aa	Known RBP	11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	CXCL16	Q9H2A7	254 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	PTPRH	Q9HD43	1115 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	TBC1D13	Q9NVG8	400 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	SEL1L	Q9UBV2	794 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	GDA	Q9Y2T3	454 aa		11.26	□□□□□ -0.61
HDAC6-222	ENST00000478095	TTC3	P53804	2025 aa		11.25	□□□□□ -0.61
HDAC6-222	ENST00000478095	TISP43	B9A030	160 aa		11.25	□□□□□ -0.61
HDAC6-222	ENST00000478095	ABLIM1	O14639	778 aa		11.25	□□□□□ -0.61
HDAC6-222	ENST00000478095	HNRNPDL	O14979	420 aa	Known RBP	11.25	□□□□□ -0.61
HDAC6-222	ENST00000478095	B4GALT3	O60512	393 aa		11.25	□□□□□ -0.61
HDAC6-222	ENST00000478095	LPXN	O60711	386 aa		11.25	□□□□□ -0.61
HDAC6-222	ENST00000478095	ZC3H11A	O75152	810 aa	Known RBP eCLIP	11.25	□□□□□ -0.61
HDAC6-222	ENST00000478095	GADD45B	O75293	160 aa	Predicted RBP	11.25	□□□□□ -0.61
HDAC6-222	ENST00000478095	TOM1L1	O75674	476 aa		11.25	□□□□□ -0.61
HDAC6-222	ENST00000478095	RECQL4	O94761	1208 aa		11.25	□□□□□ -0.61
HDAC6-222	ENST00000478095	ZNF202	O95125	648 aa		11.25	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms