RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 RBMXL2O75526 392 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-212ENST00000474059 ELANEP08246 267 aa5.12□□□□□ -1.59
CCDC88A-212ENST00000474059 CXCR5P32302 372 aa5.12□□□□□ -1.59
CCDC88A-212ENST00000474059 GUCY1B3Q02153 619 aa5.12□□□□□ -1.59
CCDC88A-212ENST00000474059 ABHD17BQ5VST6 288 aa5.12□□□□□ -1.59
CCDC88A-212ENST00000474059 ABHD15Q6UXT9 468 aa5.12□□□□□ -1.59
CCDC88A-212ENST00000474059 NXPE1Q8N323 547 aa5.12□□□□□ -1.59
CCDC88A-212ENST00000474059 CHTF18Q8WVB6 975 aa5.12□□□□□ -1.59
CCDC88A-212ENST00000474059 RSAD1Q9HA92 442 aa5.12□□□□□ -1.59
CCDC88A-212ENST00000474059 EVLQ9UI08 416 aaPredicted RBP5.12□□□□□ -1.59
CCDC88A-212ENST00000474059 USP18Q9UMW8 372 aa5.12□□□□□ -1.59
CCDC88A-212ENST00000474059 MAFGO15525 162 aa5.11□□□□□ -1.59
CCDC88A-212ENST00000474059 CD40P25942 277 aa5.11□□□□□ -1.59
CCDC88A-212ENST00000474059 MGAT5Q09328 741 aa5.11□□□□□ -1.59
CCDC88A-212ENST00000474059 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-212ENST00000474059 EFHBQ8N7U6 833 aa5.11□□□□□ -1.59
CCDC88A-212ENST00000474059 GAB3Q8WWW8 586 aa5.11□□□□□ -1.59
CCDC88A-212ENST00000474059 CAVIN3Q969G5 261 aa5.11□□□□□ -1.59
CCDC88A-212ENST00000474059 MTFR1LQ9H019 292 aa5.11□□□□□ -1.59
CCDC88A-212ENST00000474059 SPON1Q9HCB6 807 aa5.11□□□□□ -1.59
CCDC88A-212ENST00000474059 MSRAQ9UJ68 235 aa5.11□□□□□ -1.59
CCDC88A-212ENST00000474059 HDAC5Q9UQL6 1122 aa5.11□□□□□ -1.59
CCDC88A-212ENST00000474059 PPP2R3BQ9Y5P8 575 aa5.11□□□□□ -1.59
CCDC88A-212ENST00000474059 MAST3O60307 1309 aa5.11□□□□□ -1.59
CCDC88A-212ENST00000474059 CCDC78A2IDD5 438 aa5.1□□□□□ -1.59
CCDC88A-212ENST00000474059 TBKBP1A7MCY6 615 aa5.1□□□□□ -1.59
CCDC88A-212ENST00000474059 F2P00734 622 aa5.1□□□□□ -1.59
CCDC88A-212ENST00000474059 CDK4P11802 303 aa5.1□□□□□ -1.59
CCDC88A-212ENST00000474059 RBM25P49756 843 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-212ENST00000474059 APBA1Q02410 837 aa5.1□□□□□ -1.59
CCDC88A-212ENST00000474059 NHLH1Q02575 133 aa5.1□□□□□ -1.59
CCDC88A-212ENST00000474059 RESTQ13127 1097 aa5.1□□□□□ -1.59
CCDC88A-212ENST00000474059 TRIM25Q14258 630 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-212ENST00000474059 BMT2Q1RMZ1 405 aa5.1□□□□□ -1.59
CCDC88A-212ENST00000474059 MFSD14BQ5SR56 506 aa5.1□□□□□ -1.59
CCDC88A-212ENST00000474059 GPR149Q86SP6 731 aa5.1□□□□□ -1.59
CCDC88A-212ENST00000474059 FUBP1Q96AE4 644 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-212ENST00000474059 IGLV2-14P01704 120 aa5.09□□□□□ -1.59
CCDC88A-212ENST00000474059 LTA4HP09960 611 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-212ENST00000474059 HSP90B1P14625 803 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-212ENST00000474059 GPR15P49685 360 aa5.09□□□□□ -1.59
CCDC88A-212ENST00000474059 SIM1P81133 766 aaPredicted RBP5.09□□□□□ -1.59
CCDC88A-212ENST00000474059 CFAP100Q494V2 611 aa5.09□□□□□ -1.59
CCDC88A-212ENST00000474059 CCDC178Q5BJE1 867 aa5.09□□□□□ -1.59
CCDC88A-212ENST00000474059 AGAP9Q5VTM2 703 aa5.09□□□□□ -1.59
CCDC88A-212ENST00000474059 ESPNLQ6ZVH7 1005 aa5.09□□□□□ -1.59
CCDC88A-212ENST00000474059 SRRM1Q8IYB3 904 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-212ENST00000474059 SLC44A3Q8N4M1 653 aa5.09□□□□□ -1.59
CCDC88A-212ENST00000474059 SLC35B2Q8TB61 432 aa5.09□□□□□ -1.59
CCDC88A-212ENST00000474059 USP15Q9Y4E8 981 aaPredicted RBP5.09□□□□□ -1.59
CCDC88A-212ENST00000474059 FPGT-TNNI3KV9GXZ4 949 aa5.09□□□□□ -1.59
CCDC88A-212ENST00000474059 CGB1A6NKQ9 187 aa5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 B5MCH6 92 aa5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 ITGA10O75578 1167 aa5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 CFIP05156 583 aa5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 RBP3P10745 1247 aa5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 MANFP55145 182 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 BLOC1S1P78537 153 aa5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 PABPC4Q13310 644 aaKnown RBP eCLIP5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 MPP3Q13368 585 aa5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 GPR158Q5T848 1215 aa5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 B3GNTL1Q67FW5 361 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 SP5Q6BEB4 398 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 UBE2R2Q712K3 238 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 BHLHA9Q7RTU4 235 aa5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 C8orf37Q96NL8 207 aa5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 THG1LQ9NWX6 298 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 FOXJ2Q9P0K8 574 aa5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 CLCA2Q9UQC9 943 aa5.08□□□□□ -1.6
CCDC88A-212ENST00000474059 MYADML2A6NDP7 307 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 LRRC3CA6NJW4 275 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 ADCY6O43306 1168 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 RFPL3O75679 317 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 ITGAMP11215 1152 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 CHN2P52757 468 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 PPARAQ07869 468 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 ZNF169Q14929 603 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 PRAMEF14Q5SWL7 426 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 EFCAB12Q6NXP0 572 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 KIF18BQ86Y91 864 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 MDM1Q8TC05 714 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 FERMT2Q96AC1 680 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 SEMA4GQ9NTN9 838 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 PRSS50Q9UI38 385 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 TLK1Q9UKI8 766 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 NUMBLQ9Y6R0 609 aa5.07□□□□□ -1.6
CCDC88A-212ENST00000474059 PNPLA7Q6ZV29 1317 aa5.06□□□□□ -1.6
CCDC88A-212ENST00000474059 ST20-MTHFSA0A0A6YYL1 179 aa5.06□□□□□ -1.6
CCDC88A-212ENST00000474059 DRGXA6NNA5 263 aa5.06□□□□□ -1.6
CCDC88A-212ENST00000474059 C1RP00736 705 aa5.06□□□□□ -1.6
CCDC88A-212ENST00000474059 CLEC2LP0C7M8 214 aa5.06□□□□□ -1.6
CCDC88A-212ENST00000474059 POU3F2P20265 443 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-212ENST00000474059 ELLP55199 621 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-212ENST00000474059 PROK1P58294 105 aa5.06□□□□□ -1.6
CCDC88A-212ENST00000474059 PHC1P78364 1004 aa5.06□□□□□ -1.6
CCDC88A-212ENST00000474059 C19orf54Q5BKX5 351 aa5.06□□□□□ -1.6
CCDC88A-212ENST00000474059 SNX33Q8WV41 574 aa5.06□□□□□ -1.6
CCDC88A-212ENST00000474059 TFAP2CQ92754 450 aa5.06□□□□□ -1.6
CCDC88A-212ENST00000474059 KLHL11Q9NVR0 708 aa5.06□□□□□ -1.6
CCDC88A-212ENST00000474059 GPRC5DQ9NZD1 345 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms