RNA–Protein interactions for RNA: ENST00000471250.5

U2AF1-208, Transcript of U2 small nuclear RNA auxiliary factor 1, human

TSL 2

Gene U2AF1, Length 1,676 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
U2AF1-208	ENST00000471250	INO80B-WBP1	J3KQ70	363 aa		28.17	■■■□□ 2.1
U2AF1-208	ENST00000471250	CLDN3	O15551	220 aa		28.17	■■■□□ 2.1
U2AF1-208	ENST00000471250	MAPK8IP2	Q13387	824 aa	Predicted RBP	28.17	■■■□□ 2.1
U2AF1-208	ENST00000471250	RAPGEF1	Q13905	1077 aa		28.17	■■■□□ 2.1
U2AF1-208	ENST00000471250	FAM187B	Q17R55	369 aa		28.17	■■■□□ 2.1
U2AF1-208	ENST00000471250	HGSNAT	Q68CP4	663 aa		28.17	■■■□□ 2.1
U2AF1-208	ENST00000471250	TSHZ1	Q6ZSZ6	1077 aa		28.17	■■■□□ 2.1
U2AF1-208	ENST00000471250	LMBR1	Q8WVP7	490 aa		28.17	■■■□□ 2.1
U2AF1-208	ENST00000471250	CCDC42	Q96M95	316 aa		28.17	■■■□□ 2.1
U2AF1-208	ENST00000471250	SPAG5	Q96R06	1193 aa		28.17	■■■□□ 2.1
U2AF1-208	ENST00000471250	MAP7D2	Q96T17	732 aa		28.17	■■■□□ 2.1
U2AF1-208	ENST00000471250	EIF3C	Q99613	913 aa	Known RBP	28.17	■■■□□ 2.1
U2AF1-208	ENST00000471250	INO80B	Q9C086	356 aa	Predicted RBP	28.17	■■■□□ 2.1
U2AF1-208	ENST00000471250	PRMT7	Q9NVM4	692 aa	Predicted RBP	28.17	■■■□□ 2.1
U2AF1-208	ENST00000471250	AJAP1	Q9UKB5	411 aa	Predicted RBP	28.17	■■■□□ 2.1
U2AF1-208	ENST00000471250		A0A087WZ62	844 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	ABLIM1	O14639	778 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	SERPING1	P05155	500 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	PLEK	P08567	350 aa	Predicted RBP	28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	ACOT2	P49753	483 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	JAM2	P57087	298 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	KRT39	Q6A163	491 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	NFRKB	Q6P4R8	1299 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	KIAA0319L	Q8IZA0	1049 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	FDXACB1	Q9BRP7	624 aa	Predicted RBP	28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	MINDY3	Q9H8M7	445 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	REXO2	Q9Y3B8	237 aa	Known RBP	28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	SSU72P8	A0A1W2PR75	194 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	TRPA1	O75762	1119 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	VTN	P04004	478 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	PROZ	P22891	400 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	GJA9	P57773	515 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	CLDN10	P78369	228 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	MCL1	Q07820	350 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	PRPF4B	Q13523	1007 aa	Known RBP	28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	ASIC2	Q16515	512 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	SLC9C1	Q4G0N8	1177 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	GJB7	Q6PEY0	223 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	POP1	Q99575	1024 aa	Known RBP	28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	KATNAL1	Q9BW62	490 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	APEX2	Q9UBZ4	518 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	COQ4	Q9Y3A0	265 aa		28.16	■■■□□ 2.1
U2AF1-208	ENST00000471250	MBLAC1	A4D2B0	266 aa	Predicted RBP	28.15	■■■□□ 2.1
U2AF1-208	ENST00000471250	RFX1	P22670	979 aa		28.15	■■■□□ 2.1
U2AF1-208	ENST00000471250	EIF4A3	P38919	411 aa	Known RBP	28.15	■■■□□ 2.1
U2AF1-208	ENST00000471250	UPF3A	Q9H1J1	476 aa	Known RBP	28.15	■■■□□ 2.1
U2AF1-208	ENST00000471250	PTPRH	Q9HD43	1115 aa		28.15	■■■□□ 2.1
U2AF1-208	ENST00000471250	DNAJC12	Q9UKB3	198 aa		28.15	■■■□□ 2.1
U2AF1-208	ENST00000471250	ZEB2	O60315	1214 aa		28.14	■■■□□ 2.1
U2AF1-208	ENST00000471250	KPNA6	O60684	536 aa		28.14	■■■□□ 2.1
U2AF1-208	ENST00000471250	GPC3	P51654	580 aa		28.14	■■■□□ 2.1
U2AF1-208	ENST00000471250	CHMP4BP1	P59074	171 aa		28.14	■■■□□ 2.1
U2AF1-208	ENST00000471250	KRT83	P78385	493 aa		28.14	■■■□□ 2.1
U2AF1-208	ENST00000471250	ZBTB41	Q5SVQ8	909 aa		28.14	■■■□□ 2.1
U2AF1-208	ENST00000471250	ATF7IP2	Q5U623	682 aa		28.14	■■■□□ 2.1
U2AF1-208	ENST00000471250	TCHP	Q9BT92	498 aa		28.14	■■■□□ 2.1
U2AF1-208	ENST00000471250	STK33	Q9BYT3	514 aa		28.14	■■■□□ 2.1
U2AF1-208	ENST00000471250	TOPORS	Q9NS56	1045 aa	Predicted RBP	28.14	■■■□□ 2.1
U2AF1-208	ENST00000471250	RBAK	Q9NYW8	714 aa	Predicted RBP	28.14	■■■□□ 2.1
U2AF1-208	ENST00000471250	SEPT4	O43236	478 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	FAM189A1	O60320	539 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	DLAT	P10515	647 aa	Known RBP	28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	YY1	P25490	414 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	ADAM17	P78536	824 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	PURA	Q00577	322 aa	Known RBP	28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	MAP2K1	Q02750	393 aa	Predicted RBP	28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	CACNB2	Q08289	660 aa	Predicted RBP	28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	TRIM32	Q13049	653 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	MPZL3	Q6UWV2	235 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	ZBTB33	Q86T24	672 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	ZNF410	Q86VK4	478 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	TNFSF13B	Q9Y275	285 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	SMIM35	A0A1B0GVV1	85 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	OGT	O15294	1046 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	IQCF3	P0C7M6	154 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	HOXD10	P28358	340 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	VEGFB	P49765	207 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	NKX3-2	P78367	333 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	AMHR2	Q16671	573 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	ASTE1	Q2TB18	679 aa	Predicted RBP	28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	PHLDB3	Q6NSJ2	640 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	IRF2BP2	Q7Z5L9	587 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	FNBP1	Q96RU3	617 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	SRRD	Q9UH36	339 aa		28.13	■■■□□ 2.09
U2AF1-208	ENST00000471250	MYADML2	A6NDP7	307 aa		28.12	■■■□□ 2.09
U2AF1-208	ENST00000471250	B4GALT5	O43286	388 aa		28.12	■■■□□ 2.09
U2AF1-208	ENST00000471250	LCA5L	O95447	670 aa		28.12	■■■□□ 2.09
U2AF1-208	ENST00000471250	C6orf222	P0C671	652 aa	Predicted RBP	28.12	■■■□□ 2.09
U2AF1-208	ENST00000471250	HARS	P12081	509 aa	Known RBP	28.12	■■■□□ 2.09
U2AF1-208	ENST00000471250	STAT1	P42224	750 aa		28.12	■■■□□ 2.09
U2AF1-208	ENST00000471250	KIF11	P52732	1056 aa		28.12	■■■□□ 2.09
U2AF1-208	ENST00000471250	C15orf39	Q6ZRI6	1047 aa		28.12	■■■□□ 2.09
U2AF1-208	ENST00000471250	SV2A	Q7L0J3	742 aa		28.12	■■■□□ 2.09
U2AF1-208	ENST00000471250	GPIHBP1	Q8IV16	184 aa		28.12	■■■□□ 2.09
U2AF1-208	ENST00000471250	NLRP7	Q8WX94	980 aa		28.12	■■■□□ 2.09
U2AF1-208	ENST00000471250	ZNF516	Q92618	1163 aa		28.12	■■■□□ 2.09
U2AF1-208	ENST00000471250	PRIMPOL	Q96LW4	560 aa		28.12	■■■□□ 2.09
U2AF1-208	ENST00000471250	PPP1R16B	Q96T49	567 aa		28.12	■■■□□ 2.09
U2AF1-208	ENST00000471250	DEF6	Q9H4E7	631 aa		28.12	■■■□□ 2.09
U2AF1-208	ENST00000471250	CNTNAP2	Q9UHC6	1331 aa		28.11	■■■□□ 2.09

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms