RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 SCOCQ9UIL1 159 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 SPAG7O75391 227 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 ZNF189O75820 626 aaPredicted RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 CD2BP2O95400 341 aaKnown RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 ACSL3O95573 720 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 MAP4P27816 1152 aaKnown RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 CDKL3Q8IVW4 592 aaPredicted RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 RMDN1Q96DB5 314 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 ACAD9Q9H845 621 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 SYTL2Q9HCH5 934 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 NOVA2Q9UNW9 492 aaKnown RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 ZBTB12Q9Y330 459 aaPredicted RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 SNX5Q9Y5X3 404 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 SYNGAP1Q96PV0 1343 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 SPDYE5A6NIY4 337 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 A8MXQ7 604 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 KRT72Q14CN4 511 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 SPDYE7PQ495Y7 208 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 TEDDM1Q5T9Z0 273 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 SWSAP1Q6NVH7 229 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 SYT2Q8N9I0 419 aaPredicted RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 RAPGEF5Q92565 580 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 KIF12Q96FN5 646 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 OSBPL3Q9H4L5 887 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 FAM217BQ9NTX9 383 aaPredicted RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 KDM6AO15550 1401 aaPredicted RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 SOWAHDA6NJG2 315 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 PODXLO00592 558 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 ZSCAN9O15535 394 aaPredicted RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 DCTN3O75935 186 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 LMNAP02545 664 aaKnown RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 ROR1Q01973 937 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 CUL1Q13616 776 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 SPARCL1Q14515 664 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 GRAMD1BQ3KR37 738 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 ANKRD40Q6AI12 368 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 TRIML2Q8N7C3 387 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 ING2Q9H160 280 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 ADARB2Q9NS39 739 aaKnown RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 GABBR1Q9UBS5 961 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 IP6K2Q9UHH9 426 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 CTIFO43310 598 aaKnown RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 SERPIND1P05546 499 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 EPHX2P34913 555 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 TRIM28Q13263 835 aaKnown RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 MED21Q13503 144 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 ARL6IP4Q66PJ3 421 aaKnown RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 SDE2Q6IQ49 451 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 XXYLT1Q8NBI6 393 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 DDX56Q9NY93 547 aaKnown RBP9.24□□□□□ -0.93
HPS4-209ENST00000466781 PCDHGB4Q9UN71 923 aa9.24□□□□□ -0.93
HPS4-209ENST00000466781 CCDC195A0A1B0GUA6 201 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 C19orf81C9J6K1 198 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 ASAP2O43150 1006 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 FDX1P10109 184 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 LCP1P13796 627 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 GNA15P30679 374 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 HMGCS2P54868 508 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 CACNB2Q08289 660 aaPredicted RBP9.23□□□□□ -0.93
HPS4-209ENST00000466781 MORF4L2Q15014 288 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 SNX17Q15036 470 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 AARS2Q5JTZ9 985 aaKnown RBP9.23□□□□□ -0.93
HPS4-209ENST00000466781 MFN1Q8IWA4 741 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 AGBL3Q8NEM8 1001 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 KITP10721 976 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 GYS1P13807 737 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 NNTQ13423 1086 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 UNC13DQ70J99 1090 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 OTULINQ96BN8 352 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 DACH2Q96NX9 599 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 KATNAL1Q9BW62 490 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 PCDHB6Q9Y5E3 794 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 TRAPPC3O43617 180 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 RPSAP08865 295 aaKnown RBP9.23□□□□□ -0.93
HPS4-209ENST00000466781 MYBL1P10243 752 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 GPC5P78333 572 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 PKN3Q6P5Z2 889 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 SFR1Q86XK3 245 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 GPT2Q8TD30 523 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 RAD54LQ92698 747 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 PGBD4Q96DM1 585 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 GOLGA8MH3BSY2 632 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 SKIP12755 728 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 ZFXP17010 805 aaPredicted RBP9.23□□□□□ -0.93
HPS4-209ENST00000466781 PSMC1P62191 440 aaKnown RBP9.23□□□□□ -0.93
HPS4-209ENST00000466781 DGKHQ86XP1 1220 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 PPHLN1Q8NEY8 458 aaKnown RBP9.23□□□□□ -0.93
HPS4-209ENST00000466781 FOPNLQ96NB1 174 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 EML4Q9HC35 981 aaKnown RBP9.23□□□□□ -0.93
HPS4-209ENST00000466781 ZNF521Q96K83 1311 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 CCL15-CCL14A0A0B4J2E2 113 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 A0A0G2JND7 137 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 FGGP02679 453 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 NR3C1P04150 777 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 IFNAR1P17181 557 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 CAV1Q03135 178 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 CCL15Q16663 113 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 DPCR1Q3MIW9 517 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 KCNV1Q6PIU1 500 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 MMS22LQ6ZRQ5 1243 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms