RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 ZCWPW2Q504Y3 356 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 PADI6Q6TGC4 694 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 C4orf19Q8IY42 314 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 ARMC2Q8NEN0 867 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 GJA10Q969M2 543 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 PDCD2LQ9BRP1 358 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 L2HGDHQ9H9P8 463 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 MTUS1Q9ULD2 1270 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 K7ERI5 159 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 NFIBO00712 420 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 HNRNPDLO14979 420 aaKnown RBP8.24□□□□□ -1.09
USP54-210ENST00000466048 ARP10275 920 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 IRX5P78411 483 aaPredicted RBP8.24□□□□□ -1.09
USP54-210ENST00000466048 GOLGA8FQ08AF8 430 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 RAD51AP2Q09MP3 1159 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 GOLGA8DPQ0D2H9 430 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 MEA1Q16626 185 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 LONRF2Q1L5Z9 754 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 IQSEC1Q6DN90 963 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 SRGAP1Q7Z6B7 1085 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 ANKRD36BP1Q96IX9 119 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 SENP7Q9BQF6 1050 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 C17orf75Q9HAS0 396 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 RGL1Q9NZL6 768 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 CPA4Q9UI42 421 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.24□□□□□ -1.09
USP54-210ENST00000466048 NFASCO94856 1347 aa8.24□□□□□ -1.09
USP54-210ENST00000466048 PFDN1O60925 122 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 PEX19P40855 299 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 C10orf76Q5T2E6 689 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 C1orf186Q6ZWK4 172 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 UBLCP1Q8WVY7 318 aaPredicted RBP8.23□□□□□ -1.09
USP54-210ENST00000466048 N4BP2L2Q92802 583 aaPredicted RBP8.23□□□□□ -1.09
USP54-210ENST00000466048 MCUR1Q96AQ8 359 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 PCDHA2Q9Y5H9 948 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 EML1O00423 815 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 DGAT1O75907 488 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 TNNI1P19237 187 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 HPDP32754 393 aaPredicted RBP8.23□□□□□ -1.09
USP54-210ENST00000466048 PPP1R7Q15435 360 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 MUM1Q2TAK8 710 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 GNASQ5JWF2 1037 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 MIIPQ5JXC2 388 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 HPS3Q969F9 1004 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 TAAR1Q96RJ0 339 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 RUSC1Q9BVN2 902 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 LSM14BQ9BX40 385 aaKnown RBP8.23□□□□□ -1.09
USP54-210ENST00000466048 KCTD10Q9H3F6 313 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 NMRK2Q9NPI5 230 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 HOMER3Q9NSC5 361 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 NDC80O14777 642 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 HOXA2O43364 376 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 PNMA6AP0CW24 399 aaPredicted RBP8.23□□□□□ -1.09
USP54-210ENST00000466048 HNRNPH3P31942 346 aaKnown RBP8.23□□□□□ -1.09
USP54-210ENST00000466048 CCT5P48643 541 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 BPIFB4P59827 614 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 ASIC2Q16515 512 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 ARSHQ5FYA8 562 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 KIAA1841Q6NSI8 718 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 EPM2AIP1Q7L775 607 aaPredicted RBP8.23□□□□□ -1.09
USP54-210ENST00000466048 TRIM59Q8IWR1 403 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 CYP2W1Q8TAV3 490 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 DTNBP1Q96EV8 351 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 APBA2Q99767 749 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 MOV10L1Q9BXT6 1211 aaKnown RBP8.23□□□□□ -1.09
USP54-210ENST00000466048 BATF3Q9NR55 127 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 CDC23Q9UJX2 597 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 SAR1BQ9Y6B6 198 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 RBBP6Q7Z6E9 1792 aaKnown RBP8.23□□□□□ -1.09
USP54-210ENST00000466048 NPHP3-ACAD11A0A0J9YXS1 232 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 SSU72P8A0A1W2PR75 194 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 GTPBP10A4D1E9 387 aaKnown RBP8.23□□□□□ -1.09
USP54-210ENST00000466048 SATB1Q01826 763 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 CFAP221Q4G0U5 840 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 DCAF17Q5H9S7 520 aaPredicted RBP8.23□□□□□ -1.09
USP54-210ENST00000466048 ZNF484Q5JVG2 852 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 CCDC62Q6P9F0 684 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 CCDC63Q8NA47 563 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 RAB3IL1Q8TBN0 382 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 P3H4Q92791 437 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 Q9H521 79 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 NHEJ1Q9H9Q4 299 aaPredicted RBP8.23□□□□□ -1.09
USP54-210ENST00000466048 AFG3L2Q9Y4W6 797 aa8.23□□□□□ -1.09
USP54-210ENST00000466048 TLDC2A0PJX2 215 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 DENND3A2RUS2 1198 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 SERPING1P05155 500 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 ZNF131P52739 623 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 CACNB1Q02641 598 aaPredicted RBP8.22□□□□□ -1.09
USP54-210ENST00000466048 RASIP1Q5U651 963 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 PDXDC1Q6P996 788 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 RAD9BQ6WBX8 426 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 RRAGAQ7L523 313 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 FAM186BQ8IYM0 893 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 SLAIN1Q8ND83 568 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 PIGOQ8TEQ8 1089 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 POMGNT1Q8WZA1 660 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 P2RX7Q99572 595 aaKnown RBP8.22□□□□□ -1.09
USP54-210ENST00000466048 DESI2Q9BSY9 194 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 FAM204AQ9H8W3 233 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 FAM207AQ9NSI2 230 aaPredicted RBP8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms