RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 IFNAR1P17181 557 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 PRKCQQ04759 706 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 CSTF1Q05048 431 aaKnown RBP16.14■□□□□ 0.17
SMC1A-204ENST00000463684 UBXN2BQ14CS0 331 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 NTRK3Q16288 839 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 SLC44A4Q53GD3 710 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 FUT10Q6P4F1 479 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 MOXD1Q6UVY6 613 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 PARM1Q6UWI2 310 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 MTSS1LQ765P7 747 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 OTUD6AQ7L8S5 288 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 GRASPQ7Z6J2 395 aaPredicted RBP16.14■□□□□ 0.17
SMC1A-204ENST00000463684 ZNF579Q8NAF0 562 aaKnown RBP16.14■□□□□ 0.17
SMC1A-204ENST00000463684 FGF14Q92915 247 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 CCDC51Q96ER9 411 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 ZFP42Q96MM3 310 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 RPP25Q9BUL9 199 aaKnown RBP16.14■□□□□ 0.17
SMC1A-204ENST00000463684 APOL6Q9BWW8 343 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 EIF2AQ9BY44 585 aaKnown RBP16.14■□□□□ 0.17
SMC1A-204ENST00000463684 GPR62Q9BZJ7 368 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 TRIM6Q9C030 488 aaPredicted RBP16.14■□□□□ 0.17
SMC1A-204ENST00000463684 DDX25Q9UHL0 483 aaKnown RBP16.14■□□□□ 0.17
SMC1A-204ENST00000463684 ADAM28Q9UKQ2 775 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 CDH7Q9ULB5 785 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 GIT1Q9Y2X7 761 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 HES2Q9Y543 173 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 NID2Q14112 1375 aa16.13■□□□□ 0.17
SMC1A-204ENST00000463684 FAM170BA6NMN3 283 aa16.13■□□□□ 0.17
SMC1A-204ENST00000463684 EML1O00423 815 aa16.13■□□□□ 0.17
SMC1A-204ENST00000463684 TADA2AO75478 443 aa16.13■□□□□ 0.17
SMC1A-204ENST00000463684 RPL17P18621 184 aaKnown RBP16.13■□□□□ 0.17
SMC1A-204ENST00000463684 PFKPQ01813 784 aa16.13■□□□□ 0.17
SMC1A-204ENST00000463684 MLF2Q15773 248 aaPredicted RBP16.13■□□□□ 0.17
SMC1A-204ENST00000463684 BLOC1S2Q6QNY1 142 aa16.13■□□□□ 0.17
SMC1A-204ENST00000463684 FERMT3Q86UX7 667 aa16.13■□□□□ 0.17
SMC1A-204ENST00000463684 TRIM22Q8IYM9 498 aa16.13■□□□□ 0.17
SMC1A-204ENST00000463684 CPB2Q96IY4 423 aa16.13■□□□□ 0.17
SMC1A-204ENST00000463684 JAKMIP1Q96N16 626 aaKnown RBP16.13■□□□□ 0.17
SMC1A-204ENST00000463684 OSBPL6Q9BZF3 934 aa16.13■□□□□ 0.17
SMC1A-204ENST00000463684 CSRNP2Q9H175 543 aa16.13■□□□□ 0.17
SMC1A-204ENST00000463684 BMP2KQ9NSY1 1161 aaPredicted RBP16.13■□□□□ 0.17
SMC1A-204ENST00000463684 PCDHGA2Q9Y5H1 932 aa16.13■□□□□ 0.17
SMC1A-204ENST00000463684 PRR5-ARHGAP8B1AHC4 643 aa16.12■□□□□ 0.17
SMC1A-204ENST00000463684 INO80B-WBP1J3KQ70 363 aa16.12■□□□□ 0.17
SMC1A-204ENST00000463684 TSPAN1O60635 241 aa16.12■□□□□ 0.17
SMC1A-204ENST00000463684 KRT37O76014 449 aa16.12■□□□□ 0.17
SMC1A-204ENST00000463684 HNRNPA1P09651 372 aaKnown RBP eCLIP16.12■□□□□ 0.17
SMC1A-204ENST00000463684 MAGEA9P43362 315 aa16.12■□□□□ 0.17
SMC1A-204ENST00000463684 ARHGAP8P85298 464 aa16.12■□□□□ 0.17
SMC1A-204ENST00000463684 PPP2R5CQ13362 524 aa16.12■□□□□ 0.17
SMC1A-204ENST00000463684 MXD4Q14582 209 aaPredicted RBP16.12■□□□□ 0.17
SMC1A-204ENST00000463684 EMC2Q15006 297 aa16.12■□□□□ 0.17
SMC1A-204ENST00000463684 LIN9Q5TKA1 542 aa16.12■□□□□ 0.17
SMC1A-204ENST00000463684 RSPO2Q6UXX9 243 aaPredicted RBP16.12■□□□□ 0.17
SMC1A-204ENST00000463684 BLIDQ8IZY5 108 aa16.12■□□□□ 0.17
SMC1A-204ENST00000463684 FAM20AQ96MK3 541 aa16.12■□□□□ 0.17
SMC1A-204ENST00000463684 MBOAT7Q96N66 472 aa16.12■□□□□ 0.17
SMC1A-204ENST00000463684 DDX23Q9BUQ8 820 aaKnown RBP16.12■□□□□ 0.17
SMC1A-204ENST00000463684 NCAM2O15394 837 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 MARCH6O60337 910 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 YWHABP31946 246 aaKnown RBP16.11■□□□□ 0.17
SMC1A-204ENST00000463684 ATXN1P54253 815 aaKnown RBP16.11■□□□□ 0.17
SMC1A-204ENST00000463684 PTENP60484 403 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 CCT2P78371 535 aaKnown RBP16.11■□□□□ 0.17
SMC1A-204ENST00000463684 SSRP1Q08945 709 aaKnown RBP16.11■□□□□ 0.17
SMC1A-204ENST00000463684 TFDP1Q14186 410 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 XKR9Q5GH70 373 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 BMP2KLQ5H9B9 411 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 PPM1LQ5SGD2 360 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 ZBTB41Q5SVQ8 909 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 C4orf19Q8IY42 314 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 FBXL16Q8N461 479 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 FGF13Q92913 245 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 NELL2Q99435 816 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 MTRQ99707 1265 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 ZSCAN32Q9NX65 697 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 POLIQ9UNA4 740 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 MTF2Q9Y483 593 aaPredicted RBP16.11■□□□□ 0.17
SMC1A-204ENST00000463684 WDR81Q562E7 1941 aa16.11■□□□□ 0.17
SMC1A-204ENST00000463684 XYLBO75191 536 aa16.1■□□□□ 0.17
SMC1A-204ENST00000463684 AKAP5P24588 427 aa16.1■□□□□ 0.17
SMC1A-204ENST00000463684 NTHL1P78549 312 aa16.1■□□□□ 0.17
SMC1A-204ENST00000463684 LMNB2Q03252 620 aa16.1■□□□□ 0.17
SMC1A-204ENST00000463684 GRIK3Q13003 919 aa16.1■□□□□ 0.17
SMC1A-204ENST00000463684 EPHA7Q15375 998 aa16.1■□□□□ 0.17
SMC1A-204ENST00000463684 GALNT17Q6IS24 598 aa16.1■□□□□ 0.17
SMC1A-204ENST00000463684 PRSS55Q6UWB4 352 aaPredicted RBP16.1■□□□□ 0.17
SMC1A-204ENST00000463684 CEP57Q86XR8 500 aa16.1■□□□□ 0.17
SMC1A-204ENST00000463684 RABGGTAQ92696 567 aa16.1■□□□□ 0.17
SMC1A-204ENST00000463684 LXNQ9BS40 222 aa16.1■□□□□ 0.17
SMC1A-204ENST00000463684 NXF3Q9H4D5 531 aaKnown RBP16.1■□□□□ 0.17
SMC1A-204ENST00000463684 NCOA5Q9HCD5 579 aaKnown RBP16.1■□□□□ 0.17
SMC1A-204ENST00000463684 WRAP73Q9P2S5 460 aaPredicted RBP16.1■□□□□ 0.17
SMC1A-204ENST00000463684 PARP2Q9UGN5 583 aa16.1■□□□□ 0.17
SMC1A-204ENST00000463684 FBXW11Q9UKB1 542 aa16.1■□□□□ 0.17
SMC1A-204ENST00000463684 VAV3Q9UKW4 847 aa16.1■□□□□ 0.17
SMC1A-204ENST00000463684 CDV3Q9UKY7 258 aaKnown RBP16.1■□□□□ 0.17
SMC1A-204ENST00000463684 SF3B1O75533 1304 aaKnown RBP eCLIP16.1■□□□□ 0.17
SMC1A-204ENST00000463684 M0R2N6 131 aa16.09■□□□□ 0.17
SMC1A-204ENST00000463684 CCL16O15467 120 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms